Gene annotation
Transcriptome id Sobic.004G078300.1
Synonym Sb04g006460
Functional annotation expressed protein
UniProt C5XXF9
Pfam PF08743
Panther DB PTHR16140 PTHR16140:SF4
NCBI CDD KOG2866; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0006281; DNA repair GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G51130 : Nse4, component of Smc5/6 DNA repair complex
RAP-DB (Rice) LOC_Os02g10090.1 : expressed protein
MaizeGDB (Corn) Zm00025a034672
Brachypodium -
Barley HORVU6Hr1G033750.4 , HORVU6Hr1G033750.5 , HORVU6Hr1G033750.2 , HORVU6Hr1G033750.3 , HORVU6Hr1G033750.1
Wheat TraesCS6B02G194000 , TraesCS6B02G194000 , TraesCS6D02G155100 , TraesCS6A02G166500
Populus -


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cDNA sequences
Sobic.004G078300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G077600 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
2 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
3 Sobic.003G218700 LSD1 zinc finger domain containing protein, expressed -
4 Sobic.001G274700 - -
5 Sobic.006G080000 protein of unknown function domain containing protein, expressed K14525: ribonucleases P/MRP protein subunit RPP25
6 Sobic.003G045200 expressed protein K18404: tudor domain-containing protein 3
7 Sobic.002G364000 myosin heavy chain-related, putative, expressed -
8 Sobic.010G080600 - -
9 Sobic.004G031400 protein kinase domain containing protein, expressed -
10 Sobic.003G245900 membrane associated DUF588 domain containing protein, putative, expressed -
11 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
12 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -
13 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
14 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C
15 Sobic.002G234600 ZOS9-15 - C2H2 zinc finger protein, expressed -
16 Sobic.005G195800 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
17 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
18 Sobic.007G054400 FAR1 family protein, expressed -
19 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
20 Sobic.004G156500 expressed protein -


Gene co-expression network
sample Sobic004G078300 Sobic004G078300 Sobic004G077600 Sobic004G077600 Sobic004G078300--Sobic004G077600 Sobic003G219400 Sobic003G219400 Sobic004G078300--Sobic003G219400 Sobic003G218700 Sobic003G218700 Sobic004G078300--Sobic003G218700 Sobic001G274700 Sobic001G274700 Sobic004G078300--Sobic001G274700 Sobic006G080000 Sobic006G080000 Sobic004G078300--Sobic006G080000 Sobic003G045200 Sobic003G045200 Sobic004G078300--Sobic003G045200 Sobic002G364000 Sobic002G364000 Sobic004G078300--Sobic002G364000 Sobic010G080600 Sobic010G080600 Sobic004G078300--Sobic010G080600 Sobic004G031400 Sobic004G031400 Sobic004G078300--Sobic004G031400 Sobic004G074300 Sobic004G074300 Sobic004G077600--Sobic004G074300 Sobic005G160400 Sobic005G160400 Sobic004G077600--Sobic005G160400 Sobic002G113900 Sobic002G113900 Sobic004G077600--Sobic002G113900 Sobic002G268400 Sobic002G268400 Sobic004G077600--Sobic002G268400 Sobic003G122500 Sobic003G122500 Sobic004G077600--Sobic003G122500 Sobic002G347000 Sobic002G347000 Sobic004G077600--Sobic002G347000 Sobic009G004600 Sobic009G004600 Sobic004G077600--Sobic009G004600 Sobic001G459100 Sobic001G459100 Sobic004G077600--Sobic001G459100 Sobic004G086700 Sobic004G086700 Sobic004G077600--Sobic004G086700 Sobic010G153532 Sobic010G153532 Sobic003G219400--Sobic010G153532 Sobic004G074200 Sobic004G074200 Sobic003G219400--Sobic004G074200 Sobic003G219400--Sobic004G078300 Sobic002G034400 Sobic002G034400 Sobic003G219400--Sobic002G034400 Sobic007G085350 Sobic007G085350 Sobic003G219400--Sobic007G085350 Sobic001G134600 Sobic001G134600 Sobic003G219400--Sobic001G134600 Sobic007G017400 Sobic007G017400 Sobic003G219400--Sobic007G017400 Sobic003G264000 Sobic003G264000 Sobic003G219400--Sobic003G264000 Sobic001G419900 Sobic001G419900 Sobic003G219400--Sobic001G419900 Sobic002G079100 Sobic002G079100 Sobic003G218700--Sobic002G079100 Sobic005G111000 Sobic005G111000 Sobic003G218700--Sobic005G111000 Sobic006G280100 Sobic006G280100 Sobic003G218700--Sobic006G280100 Sobic002G234600 Sobic002G234600 Sobic003G218700--Sobic002G234600 Sobic008G017100 Sobic008G017100 Sobic003G218700--Sobic008G017100 Sobic010G262100 Sobic010G262100 Sobic003G218700--Sobic010G262100 Sobic010G138900 Sobic010G138900 Sobic003G218700--Sobic010G138900 Sobic008G088842 Sobic008G088842 Sobic003G218700--Sobic008G088842 Sobic001G134300 Sobic001G134300 Sobic003G218700--Sobic001G134300 Sobic010G151900 Sobic010G151900 Sobic001G274700--Sobic010G151900 Sobic001G267900 Sobic001G267900 Sobic001G274700--Sobic001G267900 Sobic007G132400 Sobic007G132400 Sobic001G274700--Sobic007G132400 Sobic005G195800 Sobic005G195800 Sobic001G274700--Sobic005G195800 Sobic009G045700 Sobic009G045700 Sobic001G274700--Sobic009G045700 Sobic001G298600 Sobic001G298600 Sobic001G274700--Sobic001G298600 Sobic008G011100 Sobic008G011100 Sobic001G274700--Sobic008G011100 Sobic010G056000 Sobic010G056000 Sobic001G274700--Sobic010G056000 Sobic001G124000 Sobic001G124000 Sobic001G274700--Sobic001G124000 Sobic007G222800 Sobic007G222800 Sobic006G080000--Sobic007G222800 Sobic001G448700 Sobic001G448700 Sobic006G080000--Sobic001G448700 Sobic010G060000 Sobic010G060000 Sobic006G080000--Sobic010G060000 Sobic008G081150 Sobic008G081150 Sobic006G080000--Sobic008G081150 Sobic002G290300 Sobic002G290300 Sobic006G080000--Sobic002G290300 Sobic006G080000--Sobic004G078300 Sobic004G117800 Sobic004G117800 Sobic006G080000--Sobic004G117800 Sobic009G094800 Sobic009G094800 Sobic006G080000--Sobic009G094800 Sobic010G171100 Sobic010G171100 Sobic006G080000--Sobic010G171100 Sobic009G074700 Sobic009G074700 Sobic003G045200--Sobic009G074700 Sobic003G045200--Sobic005G195800 Sobic010G278600 Sobic010G278600 Sobic003G045200--Sobic010G278600 Sobic007G043900 Sobic007G043900 Sobic003G045200--Sobic007G043900 Sobic008G100100 Sobic008G100100 Sobic003G045200--Sobic008G100100 Sobic009G040800 Sobic009G040800 Sobic003G045200--Sobic009G040800 Sobic003G045200--Sobic001G274700 Sobic006G028700 Sobic006G028700 Sobic003G045200--Sobic006G028700 Sobic001G522400 Sobic001G522400 Sobic003G045200--Sobic001G522400 Sobic009G255800 Sobic009G255800 Sobic002G364000--Sobic009G255800 Sobic007G043200 Sobic007G043200 Sobic002G364000--Sobic007G043200 Sobic002G364000--Sobic004G078300 Sobic002G364000--Sobic010G080600 Sobic007G193800 Sobic007G193800 Sobic002G364000--Sobic007G193800 Sobic006G169800 Sobic006G169800 Sobic002G364000--Sobic006G169800 Sobic010G131000 Sobic010G131000 Sobic002G364000--Sobic010G131000 Sobic002G388500 Sobic002G388500 Sobic002G364000--Sobic002G388500 Sobic007G071400 Sobic007G071400 Sobic002G364000--Sobic007G071400 Sobic010G080600--Sobic003G218700 Sobic010G038100 Sobic010G038100 Sobic010G080600--Sobic010G038100 Sobic007G171100 Sobic007G171100 Sobic010G080600--Sobic007G171100 Sobic004G010600 Sobic004G010600 Sobic010G080600--Sobic004G010600 Sobic010G080600--Sobic002G364000 Sobic010G080600--Sobic004G078300 Sobic006G275000 Sobic006G275000 Sobic010G080600--Sobic006G275000 Sobic010G080600--Sobic010G262100 Sobic001G507600 Sobic001G507600 Sobic010G080600--Sobic001G507600 Sobic009G215800 Sobic009G215800 Sobic004G031400--Sobic009G215800 Sobic010G005600 Sobic010G005600 Sobic004G031400--Sobic010G005600 Sobic006G274600 Sobic006G274600 Sobic004G031400--Sobic006G274600 Sobic001G281600 Sobic001G281600 Sobic004G031400--Sobic001G281600 Sobic007G052900 Sobic007G052900 Sobic004G031400--Sobic007G052900 Sobic004G031400--Sobic009G045700 Sobic008G083000 Sobic008G083000 Sobic004G031400--Sobic008G083000 Sobic007G054400 Sobic007G054400 Sobic004G031400--Sobic007G054400 Sobic003G197800 Sobic003G197800 Sobic004G031400--Sobic003G197800
Octagon: transcription factors


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