Gene annotation
Transcriptome id Sobic.005G195800.1,Sobic.005G195800.3,Sobic.005G195800.2
Synonym Sb05g025260, ATU2AF65A
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A1B6PTK2 , A0A1B6PTK0 , A0A1B6PTJ4
Pfam PF14259 PF00076
Panther DB PTHR23139 PTHR23139:SF62
NCBI CDD KOG0131; Splicing factor 3b, subunit 4 KOG0120Splicing factor U2AF, large subunit (RRM superfamily)
KEGG Orthology K12837; splicing factor U2AF 65 kDa subunit
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G36690 : U2 snRNP auxilliary factor, large subunit, splicing factor
RAP-DB (Rice) LOC_Os11g41820.2,LOC_Os11g41820.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a015888 , Zm00025a015893 , Zm00025a029128 , Zm00025a029267
Brachypodium KQJ87609 , PNT63164 , PNT63165 , PNT63162 , PNT63163 , KQJ87234 , KQJ87235 , KQJ87236 , KQJ87233 , KQJ87610 , KQJ87611
Barley HORVU4Hr1G038850.32 , HORVU4Hr1G029030.8 , HORVU4Hr1G029030.9 , HORVU4Hr1G029030.6 , HORVU4Hr1G029030.7 , HORVU4Hr1G029030.4 , HORVU4Hr1G029030.5 , HORVU4Hr1G029030.2 , HORVU4Hr1G029030.3 , HORVU4Hr1G029030.1 , HORVU4Hr1G038850.34 , HORVU4Hr1G038850.35 , HORVU4Hr1G038850.18 , HORVU4Hr1G038850.19 , HORVU4Hr1G038850.10 , HORVU4Hr1G038850.11 , HORVU4Hr1G038850.12 , HORVU4Hr1G038850.13 , HORVU4Hr1G038850.14 , HORVU4Hr1G038850.15 , HORVU4Hr1G038850.16 , HORVU4Hr1G038850.17 , HORVU5Hr1G089980.1 , HORVU5Hr1G089980.3 , HORVU5Hr1G089980.2 , HORVU5Hr1G089980.5 , HORVU5Hr1G089980.4 , HORVU5Hr1G089980.7 , HORVU5Hr1G089980.6 , HORVU5Hr1G089980.9 , HORVU5Hr1G089980.8 , HORVU5Hr1G089980.11 , HORVU5Hr1G089980.10 , HORVU5Hr1G090000.10 , HORVU4Hr1G029030.14 , HORVU4Hr1G029030.15 , HORVU4Hr1G029030.16 , HORVU4Hr1G029030.17 , HORVU4Hr1G029030.10 , HORVU4Hr1G029030.11 , HORVU4Hr1G029030.12 , HORVU4Hr1G029030.13 , HORVU4Hr1G029030.18 , HORVU4Hr1G029030.19 , HORVU4Hr1G038850.31 , HORVU4Hr1G038850.29 , HORVU4Hr1G038850.28 , HORVU4Hr1G038850.25 , HORVU4Hr1G038850.24 , HORVU4Hr1G038850.27 , HORVU4Hr1G038850.26 , HORVU4Hr1G038850.21 , HORVU4Hr1G038850.20 , HORVU4Hr1G038850.23 , HORVU4Hr1G038850.22 , HORVU4Hr1G038850.8 , HORVU4Hr1G038850.9 , HORVU4Hr1G038850.3 , HORVU4Hr1G038850.1 , HORVU4Hr1G038850.6 , HORVU4Hr1G038850.7 , HORVU4Hr1G038850.4 , HORVU4Hr1G038850.5 , HORVU4Hr1G029030.29 , HORVU4Hr1G029030.28 , HORVU4Hr1G029030.21 , HORVU4Hr1G029030.20 , HORVU4Hr1G029030.23 , HORVU4Hr1G029030.22 , HORVU4Hr1G029030.24 , HORVU4Hr1G029030.27 , HORVU4Hr1G029030.26 , HORVU4Hr1G038850.33 , HORVU4Hr1G038850.30 , HORVU5Hr1G090000.8 , HORVU5Hr1G090000.9 , HORVU5Hr1G090000.6 , HORVU5Hr1G090000.7 , HORVU5Hr1G090000.4 , HORVU5Hr1G090000.5 , HORVU5Hr1G090000.2 , HORVU5Hr1G090000.3 , HORVU5Hr1G090000.1
Wheat TraesCS4A02G165000 , TraesCS4A02G165000 , TraesCS4A02G165000 , TraesCS4A02G165000 , TraesCS5A02G366000 , TraesCS5A02G366000 , TraesCS5A02G366000 , TraesCS5A02G366000 , TraesCS4A02G171800 , TraesCS5B02G041900 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4B02G145600 , TraesCS4B02G145600 , TraesCS4B02G145600 , TraesCS4B02G145600 , TraesCS4A02G171800 , TraesCS4A02G171800 , TraesCS4A02G171800 , TraesCS4A02G171800 , TraesCS4D02G150000 , TraesCS4D02G150000 , TraesCS4D02G150000 , TraesCS4D02G150000 , TraesCS4D02G150000 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCS5A02G040700 , TraesCS5B02G368400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G144933 - -
2 Sobic.001G094000 expressed protein -
3 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
4 Sobic.003G170100 - -
5 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
6 Sobic.001G303675 - -
7 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
8 Sobic.009G178800 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
9 Sobic.003G268300 surp module family protein, putative, expressed -
10 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
11 Sobic.009G104300 - -
12 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
13 Sobic.006G080300 SET domain containing protein, expressed -
14 Sobic.003G084900 expressed protein -
15 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
16 Sobic.007G227000 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
17 Sobic.001G477800 expressed protein -
18 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
19 Sobic.007G116400 - -
20 Sobic.002G248400 ENT domain containing protein, expressed -


Gene co-expression network
sample Sobic005G195800 Sobic005G195800 Sobic002G144933 Sobic002G144933 Sobic005G195800--Sobic002G144933 Sobic001G094000 Sobic001G094000 Sobic005G195800--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic005G195800--Sobic002G157000 Sobic003G170100 Sobic003G170100 Sobic005G195800--Sobic003G170100 Sobic001G420200 Sobic001G420200 Sobic005G195800--Sobic001G420200 Sobic001G303675 Sobic001G303675 Sobic005G195800--Sobic001G303675 Sobic008G173900 Sobic008G173900 Sobic005G195800--Sobic008G173900 Sobic009G178800 Sobic009G178800 Sobic005G195800--Sobic009G178800 Sobic003G268300 Sobic003G268300 Sobic005G195800--Sobic003G268300 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic002G144933--Sobic001G420200 Sobic002G144933--Sobic003G268300 Sobic001G274200 Sobic001G274200 Sobic002G144933--Sobic001G274200 Sobic007G037900 Sobic007G037900 Sobic002G144933--Sobic007G037900 Sobic004G145500 Sobic004G145500 Sobic002G144933--Sobic004G145500 Sobic002G144933--Sobic003G170100 Sobic009G065100 Sobic009G065100 Sobic002G144933--Sobic009G065100 Sobic007G011400 Sobic007G011400 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G477800 Sobic001G477800 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic002G248400 Sobic002G248400 Sobic002G157000--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic005G110472 Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G170100--Sobic003G268300 Sobic003G170100--Sobic003G200200 Sobic007G096600 Sobic007G096600 Sobic003G170100--Sobic007G096600 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic007G137900 Sobic007G137900 Sobic003G170100--Sobic007G137900 Sobic003G170100--Sobic001G162300 Sobic001G420200--Sobic001G274200 Sobic001G420200--Sobic002G157000 Sobic001G420200--Sobic003G268300 Sobic001G420200--Sobic008G173900 Sobic001G420200--Sobic002G248400 Sobic001G420200--Sobic007G096600 Sobic001G420200--Sobic007G037900 Sobic001G420200--Sobic002G144933 Sobic007G178700 Sobic007G178700 Sobic001G420200--Sobic007G178700 Sobic001G306900 Sobic001G306900 Sobic001G303675--Sobic001G306900 Sobic001G303675--Sobic001G094000 Sobic001G303675--Sobic002G144933 Sobic009G100050 Sobic009G100050 Sobic001G303675--Sobic009G100050 Sobic005G015900 Sobic005G015900 Sobic001G303675--Sobic005G015900 Sobic001G303675--Sobic002G320500 Sobic004G096500 Sobic004G096500 Sobic001G303675--Sobic004G096500 Sobic002G151600 Sobic002G151600 Sobic001G303675--Sobic002G151600 Sobic001G303675--Sobic003G170100 Sobic008G173900--Sobic002G157000 Sobic008G173900--Sobic002G144933 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic008G173900--Sobic007G096600 Sobic009G178800--Sobic002G248400 Sobic009G178800--Sobic008G054500 Sobic009G178800--Sobic002G157000 Sobic006G183800 Sobic006G183800 Sobic009G178800--Sobic006G183800 Sobic006G032400 Sobic006G032400 Sobic009G178800--Sobic006G032400 Sobic009G178800--Sobic002G320500 Sobic009G178800--Sobic001G420200 Sobic009G178800--Sobic002G144933 Sobic003G084900 Sobic003G084900 Sobic009G178800--Sobic003G084900 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic003G268300--Sobic007G178700 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900
Octagon: transcription factors


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