Gene annotation
Transcriptome id Sobic.007G054400.1
Synonym FRS12
Functional annotation FAR1 family protein, expressed
UniProt A0A1Z5R874
Pfam PF04434 PF10551 PF03101
Panther DB PTHR31669 PTHR31669:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G06250 : FAR1-related sequence 7
RAP-DB (Rice) LOC_Os08g06930.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium PNT66722 , PNT66720 , PNT66723 , PNT66721 , PNT66724 , PNT66719 , KQJ95260 , KQJ95261 , KQJ95262
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G054400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
2 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
3 Sobic.003G101500 dnaJ domain containing protein, expressed -
4 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
5 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
6 Sobic.004G258700 PHD-finger family protein, expressed -
7 Sobic.001G433300 SWIM zinc finger family protein, putative, expressed -
8 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
9 Sobic.006G052300 dnaJ domain containing protein, expressed -
10 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
11 Sobic.006G118700 MYB family transcription factor, putative, expressed -
12 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
13 Sobic.008G092532 - -
14 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
15 Sobic.010G277500 expressed protein -
16 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
17 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
18 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
19 Sobic.003G173950 - -
20 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1


Gene co-expression network
sample Sobic007G054400 Sobic007G054400 Sobic001G253200 Sobic001G253200 Sobic007G054400--Sobic001G253200 Sobic004G039200 Sobic004G039200 Sobic007G054400--Sobic004G039200 Sobic003G101500 Sobic003G101500 Sobic007G054400--Sobic003G101500 Sobic004G145500 Sobic004G145500 Sobic007G054400--Sobic004G145500 Sobic003G197800 Sobic003G197800 Sobic007G054400--Sobic003G197800 Sobic004G258700 Sobic004G258700 Sobic007G054400--Sobic004G258700 Sobic001G433300 Sobic001G433300 Sobic007G054400--Sobic001G433300 Sobic009G065100 Sobic009G065100 Sobic007G054400--Sobic009G065100 Sobic006G052300 Sobic006G052300 Sobic007G054400--Sobic006G052300 Sobic001G253200--Sobic007G054400 Sobic005G079800 Sobic005G079800 Sobic001G253200--Sobic005G079800 Sobic001G253200--Sobic004G039200 Sobic001G253200--Sobic001G433300 Sobic001G253200--Sobic003G101500 Sobic002G151600 Sobic002G151600 Sobic001G253200--Sobic002G151600 Sobic002G309800 Sobic002G309800 Sobic001G253200--Sobic002G309800 Sobic001G253200--Sobic003G197800 Sobic008G100100 Sobic008G100100 Sobic001G253200--Sobic008G100100 Sobic009G024000 Sobic009G024000 Sobic004G039200--Sobic009G024000 Sobic004G039200--Sobic003G101500 Sobic007G161000 Sobic007G161000 Sobic004G039200--Sobic007G161000 Sobic007G065400 Sobic007G065400 Sobic004G039200--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic004G039200--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic007G117400 Sobic007G117400 Sobic004G039200--Sobic007G117400 Sobic004G039200--Sobic007G054400 Sobic003G101500--Sobic004G039200 Sobic003G101500--Sobic004G258700 Sobic003G101500--Sobic007G161000 Sobic009G260500 Sobic009G260500 Sobic003G101500--Sobic009G260500 Sobic003G101500--Sobic007G054400 Sobic001G456900 Sobic001G456900 Sobic003G101500--Sobic001G456900 Sobic003G101500--Sobic008G113100 Sobic003G101500--Sobic008G028700 Sobic003G101500--Sobic009G024000 Sobic004G145500--Sobic007G065400 Sobic008G173900 Sobic008G173900 Sobic004G145500--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic004G145500--Sobic002G144933 Sobic004G145500--Sobic008G009700 Sobic001G306900 Sobic001G306900 Sobic004G145500--Sobic001G306900 Sobic003G200200 Sobic003G200200 Sobic004G145500--Sobic003G200200 Sobic009G210500 Sobic009G210500 Sobic004G145500--Sobic009G210500 Sobic010G136600 Sobic010G136600 Sobic004G145500--Sobic010G136600 Sobic001G241200 Sobic001G241200 Sobic004G145500--Sobic001G241200 Sobic002G157000 Sobic002G157000 Sobic003G197800--Sobic002G157000 Sobic002G320500 Sobic002G320500 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic003G197800--Sobic002G151600 Sobic006G133800 Sobic006G133800 Sobic003G197800--Sobic006G133800 Sobic003G197800--Sobic009G065100 Sobic003G173950 Sobic003G173950 Sobic003G197800--Sobic003G173950 Sobic002G248400 Sobic002G248400 Sobic003G197800--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic003G197800--Sobic001G206100 Sobic004G258700--Sobic008G113100 Sobic004G258700--Sobic008G028700 Sobic004G258700--Sobic001G456900 Sobic003G148000 Sobic003G148000 Sobic004G258700--Sobic003G148000 Sobic004G258700--Sobic003G101500 Sobic010G277500 Sobic010G277500 Sobic004G258700--Sobic010G277500 Sobic004G258700--Sobic007G065400 Sobic004G258700--Sobic007G161000 Sobic009G040600 Sobic009G040600 Sobic004G258700--Sobic009G040600 Sobic001G433300--Sobic007G054400 Sobic001G433300--Sobic001G253200 Sobic001G433300--Sobic003G101500 Sobic003G438900 Sobic003G438900 Sobic001G433300--Sobic003G438900 Sobic001G433300--Sobic005G079800 Sobic001G433300--Sobic004G039200 Sobic001G433300--Sobic008G113100 Sobic004G264300 Sobic004G264300 Sobic001G433300--Sobic004G264300 Sobic003G293200 Sobic003G293200 Sobic001G433300--Sobic003G293200 Sobic009G065100--Sobic002G320500 Sobic009G065100--Sobic002G157000 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic009G065100--Sobic004G084300 Sobic009G065100--Sobic002G144933 Sobic009G065100--Sobic002G309800 Sobic001G107500 Sobic001G107500 Sobic009G065100--Sobic001G107500 Sobic009G065100--Sobic003G197800 Sobic006G052300--Sobic004G264300 Sobic004G009600 Sobic004G009600 Sobic006G052300--Sobic004G009600 Sobic006G220000 Sobic006G220000 Sobic006G052300--Sobic006G220000 Sobic006G052300--Sobic007G054400 Sobic004G096500 Sobic004G096500 Sobic006G052300--Sobic004G096500 Sobic006G210000 Sobic006G210000 Sobic006G052300--Sobic006G210000 Sobic006G052300--Sobic004G145500 Sobic006G052300--Sobic008G100100 Sobic006G052300--Sobic010G277500
Octagon: transcription factors


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