Gene annotation
Transcriptome id Sobic.001G433300.1
Synonym Sb01g040760, FRS5
Functional annotation SWIM zinc finger family protein, putative, expressed
UniProt C5WQU8
Pfam PF03101 PF10551
Panther DB PTHR31669 PTHR31669:SF51
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT4G38180 : FAR1-related sequence 5
RAP-DB (Rice) LOC_Os03g15010.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium KQK22518
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G054400 FAR1 family protein, expressed -
2 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
3 Sobic.003G101500 dnaJ domain containing protein, expressed -
4 Sobic.003G438900 FYVE zinc finger domain containing protein, expressed -
5 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
6 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
7 Sobic.008G113100 protein binding protein, putative, expressed -
8 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
9 Sobic.003G293200 plus-3 domain containing protein, expressed -
10 Sobic.008G092532 - -
11 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
12 Sobic.004G258700 PHD-finger family protein, expressed -
13 Sobic.006G052300 dnaJ domain containing protein, expressed -
14 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
15 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
16 Sobic.001G398800 FHA domain containing protein, putative, expressed -
17 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
18 Sobic.008G047300 Trihelix Family(PubMedID : 24864043)@homeodomain, putative, expressed -
19 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
20 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin


Gene co-expression network
sample Sobic001G433300 Sobic001G433300 Sobic007G054400 Sobic007G054400 Sobic001G433300--Sobic007G054400 Sobic001G253200 Sobic001G253200 Sobic001G433300--Sobic001G253200 Sobic003G101500 Sobic003G101500 Sobic001G433300--Sobic003G101500 Sobic003G438900 Sobic003G438900 Sobic001G433300--Sobic003G438900 Sobic005G079800 Sobic005G079800 Sobic001G433300--Sobic005G079800 Sobic004G039200 Sobic004G039200 Sobic001G433300--Sobic004G039200 Sobic008G113100 Sobic008G113100 Sobic001G433300--Sobic008G113100 Sobic004G264300 Sobic004G264300 Sobic001G433300--Sobic004G264300 Sobic003G293200 Sobic003G293200 Sobic001G433300--Sobic003G293200 Sobic007G054400--Sobic001G253200 Sobic007G054400--Sobic004G039200 Sobic007G054400--Sobic003G101500 Sobic004G145500 Sobic004G145500 Sobic007G054400--Sobic004G145500 Sobic003G197800 Sobic003G197800 Sobic007G054400--Sobic003G197800 Sobic004G258700 Sobic004G258700 Sobic007G054400--Sobic004G258700 Sobic007G054400--Sobic001G433300 Sobic009G065100 Sobic009G065100 Sobic007G054400--Sobic009G065100 Sobic006G052300 Sobic006G052300 Sobic007G054400--Sobic006G052300 Sobic001G253200--Sobic007G054400 Sobic001G253200--Sobic005G079800 Sobic001G253200--Sobic004G039200 Sobic001G253200--Sobic001G433300 Sobic001G253200--Sobic003G101500 Sobic002G151600 Sobic002G151600 Sobic001G253200--Sobic002G151600 Sobic002G309800 Sobic002G309800 Sobic001G253200--Sobic002G309800 Sobic001G253200--Sobic003G197800 Sobic008G100100 Sobic008G100100 Sobic001G253200--Sobic008G100100 Sobic003G101500--Sobic004G039200 Sobic003G101500--Sobic004G258700 Sobic007G161000 Sobic007G161000 Sobic003G101500--Sobic007G161000 Sobic009G260500 Sobic009G260500 Sobic003G101500--Sobic009G260500 Sobic003G101500--Sobic007G054400 Sobic001G456900 Sobic001G456900 Sobic003G101500--Sobic001G456900 Sobic003G101500--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic003G101500--Sobic008G028700 Sobic009G024000 Sobic009G024000 Sobic003G101500--Sobic009G024000 Sobic003G438900--Sobic005G079800 Sobic002G153700 Sobic002G153700 Sobic003G438900--Sobic002G153700 Sobic003G427100 Sobic003G427100 Sobic003G438900--Sobic003G427100 Sobic007G191700 Sobic007G191700 Sobic003G438900--Sobic007G191700 Sobic003G438900--Sobic007G054400 Sobic003G438900--Sobic001G433300 Sobic007G041300 Sobic007G041300 Sobic003G438900--Sobic007G041300 Sobic004G088200 Sobic004G088200 Sobic003G438900--Sobic004G088200 Sobic003G438900--Sobic001G253200 Sobic005G079800--Sobic003G438900 Sobic005G079800--Sobic001G253200 Sobic005G079800--Sobic007G191700 Sobic005G079800--Sobic002G153700 Sobic005G021500 Sobic005G021500 Sobic005G079800--Sobic005G021500 Sobic005G079800--Sobic003G427100 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic004G096500 Sobic004G096500 Sobic005G079800--Sobic004G096500 Sobic004G039200--Sobic009G024000 Sobic004G039200--Sobic003G101500 Sobic004G039200--Sobic007G161000 Sobic007G065400 Sobic007G065400 Sobic004G039200--Sobic007G065400 Sobic004G039200--Sobic008G113100 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic007G117400 Sobic007G117400 Sobic004G039200--Sobic007G117400 Sobic004G039200--Sobic007G054400 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic008G113100--Sobic001G456900 Sobic008G113100--Sobic009G024000 Sobic009G040600 Sobic009G040600 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic008G113100--Sobic004G039200 Sobic004G264300--Sobic003G293200 Sobic004G264300--Sobic004G039200 Sobic004G264300--Sobic007G117400 Sobic004G264300--Sobic006G052300 Sobic004G264300--Sobic004G145500 Sobic004G264300--Sobic007G054400 Sobic004G264300--Sobic009G024000 Sobic004G009600 Sobic004G009600 Sobic004G264300--Sobic004G009600 Sobic001G124000 Sobic001G124000 Sobic004G264300--Sobic001G124000 Sobic010G001100 Sobic010G001100 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic003G293200--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic003G293200--Sobic010G065300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600
Octagon: transcription factors


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