Gene annotation
Transcriptome id Sobic.010G060000.2
Synonym Sb10g005190
Functional annotation -
UniProt C5Z5D8
Pfam -
Panther DB PTHR37240
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14870 : secE/sec61-gamma protein transport protein
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a049821
Brachypodium KQJ96864 , KQJ96863 , KQJ96862 , PNT67442
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G060000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G136600 SET domain-containing protein, putative, expressed -
2 Sobic.001G077100 pentatricopeptide, putative, expressed -
3 Sobic.002G104000 - -
4 Sobic.004G018500 - -
5 Sobic.002G226100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.009G206400 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
7 Sobic.006G269400 expressed protein -
8 Sobic.003G421400 expressed protein -
9 Sobic.009G138900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.006G080000 protein of unknown function domain containing protein, expressed K14525: ribonucleases P/MRP protein subunit RPP25
11 Sobic.006G004000 - -
12 Sobic.001G281800 enzyme of the cupin superfamily protein, putative, expressed -
13 Sobic.003G437600 thioredoxin, putative, expressed -
14 Sobic.006G074100 ctr copper transporter family protein, putative, expressed -
15 Sobic.002G343700 expressed protein -
16 Sobic.008G022600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@E2F-related protein, putative, expressed -
17 Sobic.004G270400 amino acid permease family protein, putative, expressed -
18 Sobic.005G089000 gibberellin receptor GID1L2, putative, expressed -
19 Sobic.009G075100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@lachrymatory factor synthase, putative, expressed -
20 Sobic.010G082800 calvin cycle protein CP12, putative, expressed -


Gene co-expression network
sample Sobic010G060000 Sobic010G060000 Sobic007G136600 Sobic007G136600 Sobic010G060000--Sobic007G136600 Sobic001G077100 Sobic001G077100 Sobic010G060000--Sobic001G077100 Sobic002G104000 Sobic002G104000 Sobic010G060000--Sobic002G104000 Sobic004G018500 Sobic004G018500 Sobic010G060000--Sobic004G018500 Sobic002G226100 Sobic002G226100 Sobic010G060000--Sobic002G226100 Sobic009G206400 Sobic009G206400 Sobic010G060000--Sobic009G206400 Sobic006G269400 Sobic006G269400 Sobic010G060000--Sobic006G269400 Sobic003G421400 Sobic003G421400 Sobic010G060000--Sobic003G421400 Sobic009G138900 Sobic009G138900 Sobic010G060000--Sobic009G138900 Sobic006G074100 Sobic006G074100 Sobic007G136600--Sobic006G074100 Sobic001G531000 Sobic001G531000 Sobic007G136600--Sobic001G531000 Sobic007G136600--Sobic002G226100 Sobic003G095000 Sobic003G095000 Sobic007G136600--Sobic003G095000 Sobic002G343700 Sobic002G343700 Sobic007G136600--Sobic002G343700 Sobic007G136600--Sobic009G138900 Sobic007G136600--Sobic010G060000 Sobic001G281800 Sobic001G281800 Sobic007G136600--Sobic001G281800 Sobic001G276100 Sobic001G276100 Sobic007G136600--Sobic001G276100 Sobic008G022600 Sobic008G022600 Sobic001G077100--Sobic008G022600 Sobic001G407900 Sobic001G407900 Sobic001G077100--Sobic001G407900 Sobic004G270400 Sobic004G270400 Sobic001G077100--Sobic004G270400 Sobic010G082800 Sobic010G082800 Sobic001G077100--Sobic010G082800 Sobic001G339100 Sobic001G339100 Sobic001G077100--Sobic001G339100 Sobic007G076900 Sobic007G076900 Sobic001G077100--Sobic007G076900 Sobic004G017200 Sobic004G017200 Sobic001G077100--Sobic004G017200 Sobic003G088800 Sobic003G088800 Sobic001G077100--Sobic003G088800 Sobic001G077100--Sobic010G060000 Sobic001G217700 Sobic001G217700 Sobic002G104000--Sobic001G217700 Sobic003G110700 Sobic003G110700 Sobic002G104000--Sobic003G110700 Sobic004G315800 Sobic004G315800 Sobic002G104000--Sobic004G315800 Sobic003G114100 Sobic003G114100 Sobic002G104000--Sobic003G114100 Sobic004G186200 Sobic004G186200 Sobic002G104000--Sobic004G186200 Sobic005G036100 Sobic005G036100 Sobic002G104000--Sobic005G036100 Sobic008G131700 Sobic008G131700 Sobic002G104000--Sobic008G131700 Sobic002G215000 Sobic002G215000 Sobic002G104000--Sobic002G215000 Sobic004G183300 Sobic004G183300 Sobic002G104000--Sobic004G183300 Sobic004G018500--Sobic010G060000 Sobic010G153532 Sobic010G153532 Sobic004G018500--Sobic010G153532 Sobic004G018500--Sobic009G206400 Sobic007G209500 Sobic007G209500 Sobic004G018500--Sobic007G209500 Sobic006G165650 Sobic006G165650 Sobic004G018500--Sobic006G165650 Sobic003G382300 Sobic003G382300 Sobic004G018500--Sobic003G382300 Sobic005G194200 Sobic005G194200 Sobic004G018500--Sobic005G194200 Sobic001G063900 Sobic001G063900 Sobic004G018500--Sobic001G063900 Sobic008G086401 Sobic008G086401 Sobic004G018500--Sobic008G086401 Sobic001G161300 Sobic001G161300 Sobic002G226100--Sobic001G161300 Sobic004G068700 Sobic004G068700 Sobic002G226100--Sobic004G068700 Sobic002G386400 Sobic002G386400 Sobic002G226100--Sobic002G386400 Sobic002G384400 Sobic002G384400 Sobic002G226100--Sobic002G384400 Sobic002G226100--Sobic001G276100 Sobic001G416300 Sobic001G416300 Sobic002G226100--Sobic001G416300 Sobic001G179100 Sobic001G179100 Sobic002G226100--Sobic001G179100 Sobic006G197700 Sobic006G197700 Sobic002G226100--Sobic006G197700 Sobic008G111300 Sobic008G111300 Sobic002G226100--Sobic008G111300 Sobic002G040500 Sobic002G040500 Sobic009G206400--Sobic002G040500 Sobic009G206400--Sobic006G165650 Sobic009G206400--Sobic010G060000 Sobic009G206400--Sobic006G074100 Sobic003G437600 Sobic003G437600 Sobic009G206400--Sobic003G437600 Sobic003G325300 Sobic003G325300 Sobic009G206400--Sobic003G325300 Sobic004G187100 Sobic004G187100 Sobic009G206400--Sobic004G187100 Sobic009G206400--Sobic003G382300 Sobic009G206400--Sobic001G077100 Sobic002G195700 Sobic002G195700 Sobic006G269400--Sobic002G195700 Sobic001G005500 Sobic001G005500 Sobic006G269400--Sobic001G005500 Sobic003G255100 Sobic003G255100 Sobic006G269400--Sobic003G255100 Sobic001G275200 Sobic001G275200 Sobic006G269400--Sobic001G275200 Sobic007G191900 Sobic007G191900 Sobic006G269400--Sobic007G191900 Sobic010G079700 Sobic010G079700 Sobic006G269400--Sobic010G079700 Sobic006G273000 Sobic006G273000 Sobic006G269400--Sobic006G273000 Sobic002G366100 Sobic002G366100 Sobic006G269400--Sobic002G366100 Sobic008G073400 Sobic008G073400 Sobic006G269400--Sobic008G073400 Sobic003G254600 Sobic003G254600 Sobic003G421400--Sobic003G254600 Sobic008G063200 Sobic008G063200 Sobic003G421400--Sobic008G063200 Sobic004G343100 Sobic004G343100 Sobic003G421400--Sobic004G343100 Sobic009G034600 Sobic009G034600 Sobic003G421400--Sobic009G034600 Sobic008G063100 Sobic008G063100 Sobic003G421400--Sobic008G063100 Sobic010G186400 Sobic010G186400 Sobic003G421400--Sobic010G186400 Sobic005G021600 Sobic005G021600 Sobic003G421400--Sobic005G021600 Sobic006G110900 Sobic006G110900 Sobic003G421400--Sobic006G110900 Sobic001G286600 Sobic001G286600 Sobic003G421400--Sobic001G286600 Sobic002G038300 Sobic002G038300 Sobic009G138900--Sobic002G038300 Sobic009G138900--Sobic002G384400 Sobic009G138900--Sobic001G161300 Sobic009G138900--Sobic002G386400 Sobic006G204100 Sobic006G204100 Sobic009G138900--Sobic006G204100 Sobic008G072300 Sobic008G072300 Sobic009G138900--Sobic008G072300 Sobic009G234200 Sobic009G234200 Sobic009G138900--Sobic009G234200 Sobic009G138900--Sobic006G197700 Sobic009G138900--Sobic010G082800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.