Gene annotation
Transcriptome id Sobic.001G077100.1
Synonym Sb01g006970
Functional annotation pentatricopeptide, putative, expressed
UniProt C5WZ93
Pfam PF14432
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47580 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g55840.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK13012
Barley HORVU5Hr1G098180.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G022600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@E2F-related protein, putative, expressed -
2 Sobic.001G407900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase C, putative, expressed -
3 Sobic.004G270400 amino acid permease family protein, putative, expressed -
4 Sobic.010G082800 calvin cycle protein CP12, putative, expressed -
5 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
6 Sobic.007G076900 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
7 Sobic.004G017200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G088800 multi-copper oxidase type I family protein, putative, expressed -
9 Sobic.010G060000 - -
10 Sobic.001G005500 plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed -
11 Sobic.002G256000 dehydrogenase, putative, expressed -
12 Sobic.001G321600 dehydration response related protein, putative, expressed -
13 Sobic.005G021600 expressed protein -
14 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
15 Sobic.002G195700 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
16 Sobic.003G107100 peptide transporter PTR2, putative, expressed -
17 Sobic.008G073400 B-box (BBX) protein(PubMedID : 30626335)@down-regulated TF in developmental senescence(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
18 Sobic.010G116500 expressed protein -
19 Sobic.006G269400 expressed protein -
20 Sobic.007G136600 SET domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G077100 Sobic001G077100 Sobic008G022600 Sobic008G022600 Sobic001G077100--Sobic008G022600 Sobic001G407900 Sobic001G407900 Sobic001G077100--Sobic001G407900 Sobic004G270400 Sobic004G270400 Sobic001G077100--Sobic004G270400 Sobic010G082800 Sobic010G082800 Sobic001G077100--Sobic010G082800 Sobic001G339100 Sobic001G339100 Sobic001G077100--Sobic001G339100 Sobic007G076900 Sobic007G076900 Sobic001G077100--Sobic007G076900 Sobic004G017200 Sobic004G017200 Sobic001G077100--Sobic004G017200 Sobic003G088800 Sobic003G088800 Sobic001G077100--Sobic003G088800 Sobic010G060000 Sobic010G060000 Sobic001G077100--Sobic010G060000 Sobic008G022600--Sobic001G077100 Sobic008G022600--Sobic010G060000 Sobic008G022600--Sobic004G270400 Sobic007G136600 Sobic007G136600 Sobic008G022600--Sobic007G136600 Sobic009G206400 Sobic009G206400 Sobic008G022600--Sobic009G206400 Sobic001G531000 Sobic001G531000 Sobic008G022600--Sobic001G531000 Sobic002G226100 Sobic002G226100 Sobic008G022600--Sobic002G226100 Sobic010G120800 Sobic010G120800 Sobic008G022600--Sobic010G120800 Sobic001G281800 Sobic001G281800 Sobic008G022600--Sobic001G281800 Sobic007G023300 Sobic007G023300 Sobic001G407900--Sobic007G023300 Sobic001G407900--Sobic001G339100 Sobic001G498300 Sobic001G498300 Sobic001G407900--Sobic001G498300 Sobic001G206200 Sobic001G206200 Sobic001G407900--Sobic001G206200 Sobic010G218600 Sobic010G218600 Sobic001G407900--Sobic010G218600 Sobic008G117400 Sobic008G117400 Sobic001G407900--Sobic008G117400 Sobic001G042301 Sobic001G042301 Sobic001G407900--Sobic001G042301 Sobic002G242000 Sobic002G242000 Sobic001G407900--Sobic002G242000 Sobic004G193400 Sobic004G193400 Sobic001G407900--Sobic004G193400 Sobic002G195700 Sobic002G195700 Sobic004G270400--Sobic002G195700 Sobic001G005500 Sobic001G005500 Sobic004G270400--Sobic001G005500 Sobic001G321600 Sobic001G321600 Sobic004G270400--Sobic001G321600 Sobic008G073400 Sobic008G073400 Sobic004G270400--Sobic008G073400 Sobic006G269400 Sobic006G269400 Sobic004G270400--Sobic006G269400 Sobic004G270400--Sobic010G082800 Sobic002G366100 Sobic002G366100 Sobic004G270400--Sobic002G366100 Sobic010G089200 Sobic010G089200 Sobic004G270400--Sobic010G089200 Sobic001G019300 Sobic001G019300 Sobic004G270400--Sobic001G019300 Sobic002G256000 Sobic002G256000 Sobic010G082800--Sobic002G256000 Sobic005G021600 Sobic005G021600 Sobic010G082800--Sobic005G021600 Sobic009G138900 Sobic009G138900 Sobic010G082800--Sobic009G138900 Sobic009G253000 Sobic009G253000 Sobic010G082800--Sobic009G253000 Sobic008G063100 Sobic008G063100 Sobic010G082800--Sobic008G063100 Sobic003G421400 Sobic003G421400 Sobic010G082800--Sobic003G421400 Sobic002G038300 Sobic002G038300 Sobic010G082800--Sobic002G038300 Sobic002G386400 Sobic002G386400 Sobic010G082800--Sobic002G386400 Sobic010G082800--Sobic002G195700 Sobic009G028400 Sobic009G028400 Sobic001G339100--Sobic009G028400 Sobic001G339100--Sobic007G023300 Sobic001G339100--Sobic001G407900 Sobic001G006000 Sobic001G006000 Sobic001G339100--Sobic001G006000 Sobic007G178500 Sobic007G178500 Sobic001G339100--Sobic007G178500 Sobic001G339100--Sobic005G021600 Sobic008G063500 Sobic008G063500 Sobic001G339100--Sobic008G063500 Sobic003G221700 Sobic003G221700 Sobic001G339100--Sobic003G221700 Sobic006G197700 Sobic006G197700 Sobic001G339100--Sobic006G197700 Sobic010G076800 Sobic010G076800 Sobic007G076900--Sobic010G076800 Sobic007G076900--Sobic001G006000 Sobic008G063200 Sobic008G063200 Sobic007G076900--Sobic008G063200 Sobic005G111500 Sobic005G111500 Sobic007G076900--Sobic005G111500 Sobic003G179400 Sobic003G179400 Sobic007G076900--Sobic003G179400 Sobic007G076900--Sobic009G028400 Sobic009G062500 Sobic009G062500 Sobic007G076900--Sobic009G062500 Sobic001G525900 Sobic001G525900 Sobic007G076900--Sobic001G525900 Sobic007G076900--Sobic001G339100 Sobic002G343700 Sobic002G343700 Sobic004G017200--Sobic002G343700 Sobic004G044000 Sobic004G044000 Sobic004G017200--Sobic004G044000 Sobic001G120000 Sobic001G120000 Sobic004G017200--Sobic001G120000 Sobic001G027600 Sobic001G027600 Sobic004G017200--Sobic001G027600 Sobic003G030900 Sobic003G030900 Sobic004G017200--Sobic003G030900 Sobic001G076500 Sobic001G076500 Sobic004G017200--Sobic001G076500 Sobic001G427000 Sobic001G427000 Sobic004G017200--Sobic001G427000 Sobic006G280050 Sobic006G280050 Sobic004G017200--Sobic006G280050 Sobic003G095000 Sobic003G095000 Sobic004G017200--Sobic003G095000 Sobic001G275200 Sobic001G275200 Sobic003G088800--Sobic001G275200 Sobic001G435500 Sobic001G435500 Sobic003G088800--Sobic001G435500 Sobic002G337001 Sobic002G337001 Sobic003G088800--Sobic002G337001 Sobic008G015100 Sobic008G015100 Sobic003G088800--Sobic008G015100 Sobic003G088800--Sobic001G019300 Sobic005G055900 Sobic005G055900 Sobic003G088800--Sobic005G055900 Sobic005G203900 Sobic005G203900 Sobic003G088800--Sobic005G203900 Sobic003G369000 Sobic003G369000 Sobic003G088800--Sobic003G369000 Sobic005G099700 Sobic005G099700 Sobic003G088800--Sobic005G099700 Sobic010G060000--Sobic007G136600 Sobic010G060000--Sobic001G077100 Sobic002G104000 Sobic002G104000 Sobic010G060000--Sobic002G104000 Sobic004G018500 Sobic004G018500 Sobic010G060000--Sobic004G018500 Sobic010G060000--Sobic002G226100 Sobic010G060000--Sobic009G206400 Sobic010G060000--Sobic006G269400 Sobic010G060000--Sobic003G421400 Sobic010G060000--Sobic009G138900
Octagon: transcription factors


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