Gene annotation
| Transcriptome id | Sobic.008G022600.1 |
|---|---|
| Synonym | Sb08g002020 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) E2F-related protein, putative, expressed |
| UniProt | A0A1B6PAX4 |
| Pfam | PF04678 |
| Panther DB | PTHR13462 PTHR13462:SF19 |
| NCBI CDD | KOG2966; Uncharacterized conserved protein |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G57610 : Protein of unknown function (DUF607) |
|---|---|
| RAP-DB (Rice) | LOC_Os12g02880.1 : E2F-related protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a029002 , Zm00025a027086 |
| Brachypodium | PNT65539 , PNT65538 , PNT65537 , PNT65536 , KQJ89492 |
| Barley | HORVU5Hr1G045710.2 , HORVU5Hr1G045710.3 , HORVU5Hr1G045710.4 , HORVU5Hr1G045710.6 , HORVU4Hr1G023660.5 , HORVU4Hr1G023660.4 , HORVU4Hr1G023660.1 , HORVU4Hr1G023660.3 , HORVU4Hr1G023660.2 |
| Wheat | TraesCS4B02G124300 , TraesCS5B02G143000 , TraesCS4D02G122200 , TraesCS5A02G143900 |
| Populus | - |
JBrowse
| Sobic.008G022600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G077100 | pentatricopeptide, putative, expressed | - |
| 2 | Sobic.010G060000 | - | - |
| 3 | Sobic.004G270400 | amino acid permease family protein, putative, expressed | - |
| 4 | Sobic.007G136600 | SET domain-containing protein, putative, expressed | - |
| 5 | Sobic.009G206400 | anthocyanidin 5,3-O-glucosyltransferase, putative, expressed | - |
| 6 | Sobic.001G531000 | expressed protein | - |
| 7 | Sobic.002G226100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 8 | Sobic.010G120800 | Leucine-rich repeat receptor-like serine/threonine/tyrosine protein kinase(PubMedID : 31721651)@protein kinase domain containing protein, expressed | - |
| 9 | Sobic.001G281800 | enzyme of the cupin superfamily protein, putative, expressed | - |
| 10 | Sobic.006G074100 | ctr copper transporter family protein, putative, expressed | - |
| 11 | Sobic.010G082800 | calvin cycle protein CP12, putative, expressed | - |
| 12 | Sobic.003G107100 | peptide transporter PTR2, putative, expressed | - |
| 13 | Sobic.006G165650 | - | - |
| 14 | Sobic.002G195700 | Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 15 | Sobic.008G073400 | B-box (BBX) protein(PubMedID : 30626335)@down-regulated TF in developmental senescence(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed | - |
| 16 | Sobic.009G075100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@lachrymatory factor synthase, putative, expressed | - |
| 17 | Sobic.009G138900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 18 | Sobic.001G339100 | glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed | K00036: G6PD, glucose-6-phosphate 1-dehydrogenase |
| 19 | Sobic.001G407900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase C, putative, expressed | - |
| 20 | Sobic.004G017200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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