Gene annotation
Transcriptome id Sobic.007G174600.1
Synonym GLT1, Sb07g024646
Functional annotation glutamate synthase, chloroplast precursor, putative, expressed
UniProt C6JSL0 , A0A109ND50
Pfam PF00310
Panther DB PTHR11938 PTHR11938:SF109
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53460 : NADH-dependent glutamate synthase 1
RAP-DB (Rice) LOC_Os01g48960.1 : glutamate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a047871 , Zm00025a047870 , Zm00025a052604 , Zm00025a038839 , Zm00025a031184 , Zm00025a051630 , Zm00025a028023 , Zm00025a042520 , Zm00025a009788
Brachypodium KQK09208
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.007G222900 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
3 Sobic.002G175900 expressed protein -
4 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
5 Sobic.004G194700 expressed protein -
6 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
7 Sobic.004G180066 - -
8 Sobic.002G290300 zinc finger Ran-binding domain-containing protein 2, putative, expressed -
9 Sobic.004G010101 - -
10 Sobic.009G057700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
11 Sobic.005G099200 - -
12 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
13 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
14 Sobic.010G015000 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
15 Sobic.010G268200 zinc finger, C3HC4 type, domain containing protein, expressed -
16 Sobic.003G151800 expressed protein -
17 Sobic.003G368800 expressed protein -
18 Sobic.002G052400 PPR repeat containing protein, expressed -
19 Sobic.008G081150 - -
20 Sobic.003G423200 NAM, putative, expressed -


Gene co-expression network
sample Sobic007G174600 Sobic007G174600 Sobic006G042200 Sobic006G042200 Sobic007G174600--Sobic006G042200 Sobic007G222900 Sobic007G222900 Sobic007G174600--Sobic007G222900 Sobic002G175900 Sobic002G175900 Sobic007G174600--Sobic002G175900 Sobic002G040800 Sobic002G040800 Sobic007G174600--Sobic002G040800 Sobic004G194700 Sobic004G194700 Sobic007G174600--Sobic004G194700 Sobic010G228700 Sobic010G228700 Sobic007G174600--Sobic010G228700 Sobic004G180066 Sobic004G180066 Sobic007G174600--Sobic004G180066 Sobic002G290300 Sobic002G290300 Sobic007G174600--Sobic002G290300 Sobic004G010101 Sobic004G010101 Sobic007G174600--Sobic004G010101 Sobic004G135300 Sobic004G135300 Sobic006G042200--Sobic004G135300 Sobic007G054100 Sobic007G054100 Sobic006G042200--Sobic007G054100 Sobic001G222250 Sobic001G222250 Sobic006G042200--Sobic001G222250 Sobic004G174900 Sobic004G174900 Sobic006G042200--Sobic004G174900 Sobic008G125600 Sobic008G125600 Sobic006G042200--Sobic008G125600 Sobic006G042200--Sobic004G010101 Sobic009G008100 Sobic009G008100 Sobic006G042200--Sobic009G008100 Sobic002G073900 Sobic002G073900 Sobic006G042200--Sobic002G073900 Sobic006G042200--Sobic002G040800 Sobic007G222900--Sobic002G290300 Sobic007G222900--Sobic004G010101 Sobic007G222900--Sobic002G040800 Sobic008G081150 Sobic008G081150 Sobic007G222900--Sobic008G081150 Sobic009G094800 Sobic009G094800 Sobic007G222900--Sobic009G094800 Sobic010G143200 Sobic010G143200 Sobic007G222900--Sobic010G143200 Sobic007G071000 Sobic007G071000 Sobic007G222900--Sobic007G071000 Sobic007G222900--Sobic006G042200 Sobic005G084400 Sobic005G084400 Sobic007G222900--Sobic005G084400 Sobic005G116900 Sobic005G116900 Sobic002G175900--Sobic005G116900 Sobic001G315800 Sobic001G315800 Sobic002G175900--Sobic001G315800 Sobic003G016400 Sobic003G016400 Sobic002G175900--Sobic003G016400 Sobic005G007700 Sobic005G007700 Sobic002G175900--Sobic005G007700 Sobic001G463400 Sobic001G463400 Sobic002G175900--Sobic001G463400 Sobic005G089000 Sobic005G089000 Sobic002G175900--Sobic005G089000 Sobic002G175900--Sobic007G174600 Sobic001G513600 Sobic001G513600 Sobic002G175900--Sobic001G513600 Sobic003G151800 Sobic003G151800 Sobic002G175900--Sobic003G151800 Sobic002G040800--Sobic010G228700 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G174900 Sobic002G174900 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic002G040800--Sobic004G135300 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000 Sobic007G076000 Sobic007G076000 Sobic004G194700--Sobic007G076000 Sobic006G007650 Sobic006G007650 Sobic004G194700--Sobic006G007650 Sobic005G182701 Sobic005G182701 Sobic004G194700--Sobic005G182701 Sobic007G055600 Sobic007G055600 Sobic004G194700--Sobic007G055600 Sobic009G115400 Sobic009G115400 Sobic004G194700--Sobic009G115400 Sobic009G115300 Sobic009G115300 Sobic004G194700--Sobic009G115300 Sobic002G202700 Sobic002G202700 Sobic004G194700--Sobic002G202700 Sobic001G056400 Sobic001G056400 Sobic004G194700--Sobic001G056400 Sobic001G410450 Sobic001G410450 Sobic004G194700--Sobic001G410450 Sobic010G228700--Sobic001G544500 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic009G105200 Sobic009G105200 Sobic010G228700--Sobic009G105200 Sobic010G171100 Sobic010G171100 Sobic010G228700--Sobic010G171100 Sobic007G000300 Sobic007G000300 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic004G180033 Sobic004G180033 Sobic004G180066--Sobic004G180033 Sobic004G180000 Sobic004G180000 Sobic004G180066--Sobic004G180000 Sobic004G180066--Sobic007G174600 Sobic004G278650 Sobic004G278650 Sobic004G180066--Sobic004G278650 Sobic004G180066--Sobic004G135300 Sobic004G289600 Sobic004G289600 Sobic004G180066--Sobic004G289600 Sobic004G180066--Sobic006G042200 Sobic005G099200 Sobic005G099200 Sobic004G180066--Sobic005G099200 Sobic004G180066--Sobic007G054100 Sobic002G290300--Sobic007G222900 Sobic002G290300--Sobic002G040800 Sobic002G290300--Sobic010G171100 Sobic001G107900 Sobic001G107900 Sobic002G290300--Sobic001G107900 Sobic002G290300--Sobic010G228700 Sobic004G237100 Sobic004G237100 Sobic002G290300--Sobic004G237100 Sobic002G290300--Sobic009G094800 Sobic002G290300--Sobic004G010101 Sobic002G290300--Sobic005G084400 Sobic009G027350 Sobic009G027350 Sobic004G010101--Sobic009G027350 Sobic004G010101--Sobic006G042200 Sobic004G010101--Sobic007G222900 Sobic004G010101--Sobic008G125600 Sobic004G010101--Sobic007G054100 Sobic007G112900 Sobic007G112900 Sobic004G010101--Sobic007G112900 Sobic003G159450 Sobic003G159450 Sobic004G010101--Sobic003G159450 Sobic001G284800 Sobic001G284800 Sobic004G010101--Sobic001G284800 Sobic009G067501 Sobic009G067501 Sobic004G010101--Sobic009G067501
Octagon: transcription factors


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