Gene annotation
Transcriptome id Sobic.002G140900.1
Synonym Sb02g012970
Functional annotation splicing factor, putative, expressed
UniProt C5X6Q2
Pfam PF12871 PF03371
Panther DB PTHR23142
NCBI CDD KOG2889; Predicted PRP38-like splicing factor
KEGG Orthology K12849; pre-mRNA-splicing factor 38A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G40650 : PRP38 family protein
RAP-DB (Rice) LOC_Os09g01630.2 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a013466
Brachypodium KQJ86873 , KQJ86872
Barley HORVU3Hr1G106310.1 , HORVU5Hr1G049700.3 , HORVU5Hr1G049700.2 , HORVU5Hr1G049700.1 , HORVU5Hr1G049700.4
Wheat TraesCS5A02G159100 , TraesCS5D02G164200 , TraesCS5B02G156900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G247000 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.007G222800 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
3 Sobic.003G189800 expressed protein K14291: phosphorylated adapter RNA export protein
4 Sobic.003G284500 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
5 Sobic.002G340350 - -
6 Sobic.009G050100 ATKINESIN-13A/KINESIN-13A, putative, expressed K11091: U1 small nuclear ribonucleoprotein A
7 Sobic.006G157300 expressed protein -
8 Sobic.001G331100 expressed protein -
9 Sobic.004G043200 expressed protein -
10 Sobic.001G190000 MYB family transcription factor, putative, expressed -
11 Sobic.003G128500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
12 Sobic.001G021700 disease resistance RPP13-like protein 1, putative, expressed -
13 Sobic.007G096200 WD-40 repeat protein family, putative, expressed -
14 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
15 Sobic.003G040100 PHD-finger domain containing protein, putative, expressed K11380: NuA3 HAT complex component NTO1
16 Sobic.005G033300 microfibrillar-associated protein 1, putative, expressed K13110: microfibrillar-associated protein 1
17 Sobic.004G237700 N-rich protein, putative, expressed -
18 Sobic.004G223900 nucleolar matrix protein-related, putative, expressed -
19 Sobic.002G330800 BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
20 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G140900 Sobic002G140900 Sobic001G247000 Sobic001G247000 Sobic002G140900--Sobic001G247000 Sobic007G222800 Sobic007G222800 Sobic002G140900--Sobic007G222800 Sobic003G189800 Sobic003G189800 Sobic002G140900--Sobic003G189800 Sobic003G284500 Sobic003G284500 Sobic002G140900--Sobic003G284500 Sobic002G340350 Sobic002G340350 Sobic002G140900--Sobic002G340350 Sobic009G050100 Sobic009G050100 Sobic002G140900--Sobic009G050100 Sobic006G157300 Sobic006G157300 Sobic002G140900--Sobic006G157300 Sobic001G331100 Sobic001G331100 Sobic002G140900--Sobic001G331100 Sobic004G043200 Sobic004G043200 Sobic002G140900--Sobic004G043200 Sobic001G247000--Sobic002G340350 Sobic006G163650 Sobic006G163650 Sobic001G247000--Sobic006G163650 Sobic006G108000 Sobic006G108000 Sobic001G247000--Sobic006G108000 Sobic007G211400 Sobic007G211400 Sobic001G247000--Sobic007G211400 Sobic004G059100 Sobic004G059100 Sobic001G247000--Sobic004G059100 Sobic009G163700 Sobic009G163700 Sobic001G247000--Sobic009G163700 Sobic003G282600 Sobic003G282600 Sobic001G247000--Sobic003G282600 Sobic003G377200 Sobic003G377200 Sobic001G247000--Sobic003G377200 Sobic003G040100 Sobic003G040100 Sobic001G247000--Sobic003G040100 Sobic006G080000 Sobic006G080000 Sobic007G222800--Sobic006G080000 Sobic005G033300 Sobic005G033300 Sobic007G222800--Sobic005G033300 Sobic007G096200 Sobic007G096200 Sobic007G222800--Sobic007G096200 Sobic007G222800--Sobic002G140900 Sobic004G134500 Sobic004G134500 Sobic007G222800--Sobic004G134500 Sobic001G199900 Sobic001G199900 Sobic007G222800--Sobic001G199900 Sobic005G164500 Sobic005G164500 Sobic007G222800--Sobic005G164500 Sobic010G171100 Sobic010G171100 Sobic007G222800--Sobic010G171100 Sobic009G105800 Sobic009G105800 Sobic007G222800--Sobic009G105800 Sobic005G021200 Sobic005G021200 Sobic003G189800--Sobic005G021200 Sobic010G269500 Sobic010G269500 Sobic003G189800--Sobic010G269500 Sobic003G189800--Sobic004G059100 Sobic001G141700 Sobic001G141700 Sobic003G189800--Sobic001G141700 Sobic003G189800--Sobic002G140900 Sobic006G245200 Sobic006G245200 Sobic003G189800--Sobic006G245200 Sobic010G042200 Sobic010G042200 Sobic003G189800--Sobic010G042200 Sobic010G262900 Sobic010G262900 Sobic003G189800--Sobic010G262900 Sobic001G021700 Sobic001G021700 Sobic003G189800--Sobic001G021700 Sobic003G128500 Sobic003G128500 Sobic003G284500--Sobic003G128500 Sobic007G072400 Sobic007G072400 Sobic003G284500--Sobic007G072400 Sobic004G109500 Sobic004G109500 Sobic003G284500--Sobic004G109500 Sobic009G088401 Sobic009G088401 Sobic003G284500--Sobic009G088401 Sobic003G284500--Sobic009G050100 Sobic002G173600 Sobic002G173600 Sobic003G284500--Sobic002G173600 Sobic004G107400 Sobic004G107400 Sobic003G284500--Sobic004G107400 Sobic003G390300 Sobic003G390300 Sobic003G284500--Sobic003G390300 Sobic010G152700 Sobic010G152700 Sobic003G284500--Sobic010G152700 Sobic002G340350--Sobic006G163650 Sobic002G340350--Sobic001G247000 Sobic002G340350--Sobic003G284500 Sobic005G131900 Sobic005G131900 Sobic002G340350--Sobic005G131900 Sobic009G254400 Sobic009G254400 Sobic002G340350--Sobic009G254400 Sobic002G340350--Sobic006G245200 Sobic010G014900 Sobic010G014900 Sobic002G340350--Sobic010G014900 Sobic007G153300 Sobic007G153300 Sobic002G340350--Sobic007G153300 Sobic007G158400 Sobic007G158400 Sobic002G340350--Sobic007G158400 Sobic009G050100--Sobic003G284500 Sobic001G150800 Sobic001G150800 Sobic009G050100--Sobic001G150800 Sobic009G050100--Sobic003G128500 Sobic006G177100 Sobic006G177100 Sobic009G050100--Sobic006G177100 Sobic002G270100 Sobic002G270100 Sobic009G050100--Sobic002G270100 Sobic010G097400 Sobic010G097400 Sobic009G050100--Sobic010G097400 Sobic009G050100--Sobic003G377200 Sobic003G148500 Sobic003G148500 Sobic009G050100--Sobic003G148500 Sobic001G210700 Sobic001G210700 Sobic009G050100--Sobic001G210700 Sobic001G190000 Sobic001G190000 Sobic006G157300--Sobic001G190000 SobicK044200 SobicK044200 Sobic006G157300--SobicK044200 Sobic002G206200 Sobic002G206200 Sobic006G157300--Sobic002G206200 Sobic009G154000 Sobic009G154000 Sobic006G157300--Sobic009G154000 Sobic010G224800 Sobic010G224800 Sobic006G157300--Sobic010G224800 Sobic003G109400 Sobic003G109400 Sobic006G157300--Sobic003G109400 Sobic006G172651 Sobic006G172651 Sobic006G157300--Sobic006G172651 Sobic001G261440 Sobic001G261440 Sobic006G157300--Sobic001G261440 Sobic010G114400 Sobic010G114400 Sobic006G157300--Sobic010G114400 Sobic004G115600 Sobic004G115600 Sobic001G331100--Sobic004G115600 Sobic001G331100--Sobic006G108000 Sobic002G279300 Sobic002G279300 Sobic001G331100--Sobic002G279300 Sobic001G331100--Sobic009G254400 Sobic006G155900 Sobic006G155900 Sobic001G331100--Sobic006G155900 Sobic008G163800 Sobic008G163800 Sobic001G331100--Sobic008G163800 Sobic003G406500 Sobic003G406500 Sobic001G331100--Sobic003G406500 Sobic001G331100--Sobic003G040100 Sobic001G263500 Sobic001G263500 Sobic001G331100--Sobic001G263500 Sobic004G043200--Sobic009G088401 Sobic004G043200--Sobic004G107400 Sobic004G043200--Sobic010G014900 Sobic004G043200--Sobic007G072400 Sobic004G043200--Sobic003G390300 Sobic005G076650 Sobic005G076650 Sobic004G043200--Sobic005G076650 Sobic004G043200--Sobic007G158400 Sobic009G028600 Sobic009G028600 Sobic004G043200--Sobic009G028600 Sobic004G043200--Sobic004G109500
Octagon: transcription factors


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