Gene annotation
Transcriptome id Sobic.004G223900.1
Synonym Sb04g026820
Functional annotation nucleolar matrix protein-related, putative, expressed
UniProt C5XY61
Pfam PF15459 PF04935
Panther DB PTHR14369 PTHR14369:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05210 : Surfeit locus protein 6
RAP-DB (Rice) LOC_Os05g30880.1 : nucleolar matrix protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a021052
Brachypodium KQK13506 , KQK13507 , KQK13508 , KQK13509 , KQK00453 , PNT74225 , PNT74224 , PNT74227 , PNT74226
Barley HORVU6Hr1G059370.1 , HORVU6Hr1G059370.2 , HORVU6Hr1G059370.3 , HORVU6Hr1G059370.4 , HORVU6Hr1G059370.5
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G429100 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
2 Sobic.010G027800 Brix domain containing protein, putative, expressed K14846: ribosome production factor 1
3 Sobic.010G081200 expressed protein K09142: methyltransferase
4 Sobic.006G157300 expressed protein -
5 Sobic.003G346200 myosin heavy chain-related, putative, expressed -
6 Sobic.005G022600 PME/invertase inhibitor, putative, expressed -
7 Sobic.001G362800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K06940: uncharacterized protein
8 Sobic.003G201400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
9 Sobic.001G148600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
10 Sobic.002G276700 protein of unknown function containing protein, expressed -
11 Sobic.004G227000 expressed protein -
12 Sobic.010G045300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.006G197000 heavy-metal-associated domain-containing protein, putative, expressed -
14 Sobic.006G136600 expressed protein K14775: UTP30, ribosome biogenesis protein UTP30
15 Sobic.001G402701 - -
16 Sobic.010G224800 patellin-5, putative, expressed -
17 Sobic.003G230300 expressed protein -
18 Sobic.008G028500 expressed protein -
19 Sobic.004G300500 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.001G261440 - -


Gene co-expression network
sample Sobic004G223900 Sobic004G223900 Sobic001G429100 Sobic001G429100 Sobic004G223900--Sobic001G429100 Sobic010G027800 Sobic010G027800 Sobic004G223900--Sobic010G027800 Sobic010G081200 Sobic010G081200 Sobic004G223900--Sobic010G081200 Sobic006G157300 Sobic006G157300 Sobic004G223900--Sobic006G157300 Sobic003G346200 Sobic003G346200 Sobic004G223900--Sobic003G346200 Sobic005G022600 Sobic005G022600 Sobic004G223900--Sobic005G022600 Sobic001G362800 Sobic001G362800 Sobic004G223900--Sobic001G362800 Sobic003G201400 Sobic003G201400 Sobic004G223900--Sobic003G201400 Sobic001G148600 Sobic001G148600 Sobic004G223900--Sobic001G148600 Sobic002G276700 Sobic002G276700 Sobic001G429100--Sobic002G276700 Sobic004G192700 Sobic004G192700 Sobic001G429100--Sobic004G192700 Sobic002G056300 Sobic002G056300 Sobic001G429100--Sobic002G056300 Sobic001G441800 Sobic001G441800 Sobic001G429100--Sobic001G441800 Sobic003G350100 Sobic003G350100 Sobic001G429100--Sobic003G350100 Sobic001G200500 Sobic001G200500 Sobic001G429100--Sobic001G200500 Sobic004G227000 Sobic004G227000 Sobic001G429100--Sobic004G227000 Sobic008G133100 Sobic008G133100 Sobic001G429100--Sobic008G133100 Sobic004G265400 Sobic004G265400 Sobic001G429100--Sobic004G265400 Sobic001G402701 Sobic001G402701 Sobic010G027800--Sobic001G402701 Sobic010G027800--Sobic006G157300 Sobic003G081400 Sobic003G081400 Sobic010G027800--Sobic003G081400 Sobic003G283750 Sobic003G283750 Sobic010G027800--Sobic003G283750 Sobic004G320300 Sobic004G320300 Sobic010G027800--Sobic004G320300 Sobic006G169400 Sobic006G169400 Sobic010G027800--Sobic006G169400 Sobic008G031600 Sobic008G031600 Sobic010G027800--Sobic008G031600 Sobic010G027800--Sobic003G201400 Sobic003G142900 Sobic003G142900 Sobic010G027800--Sobic003G142900 Sobic003G149900 Sobic003G149900 Sobic010G081200--Sobic003G149900 Sobic003G105300 Sobic003G105300 Sobic010G081200--Sobic003G105300 Sobic001G407000 Sobic001G407000 Sobic010G081200--Sobic001G407000 Sobic004G354800 Sobic004G354800 Sobic010G081200--Sobic004G354800 SobicK044200 SobicK044200 Sobic010G081200--SobicK044200 Sobic008G020300 Sobic008G020300 Sobic010G081200--Sobic008G020300 Sobic003G400332 Sobic003G400332 Sobic010G081200--Sobic003G400332 Sobic002G425900 Sobic002G425900 Sobic010G081200--Sobic002G425900 Sobic003G109400 Sobic003G109400 Sobic010G081200--Sobic003G109400 Sobic001G190000 Sobic001G190000 Sobic006G157300--Sobic001G190000 Sobic006G157300--SobicK044200 Sobic002G206200 Sobic002G206200 Sobic006G157300--Sobic002G206200 Sobic009G154000 Sobic009G154000 Sobic006G157300--Sobic009G154000 Sobic010G224800 Sobic010G224800 Sobic006G157300--Sobic010G224800 Sobic006G157300--Sobic003G109400 Sobic006G172651 Sobic006G172651 Sobic006G157300--Sobic006G172651 Sobic001G261440 Sobic001G261440 Sobic006G157300--Sobic001G261440 Sobic010G114400 Sobic010G114400 Sobic006G157300--Sobic010G114400 Sobic004G300500 Sobic004G300500 Sobic003G346200--Sobic004G300500 Sobic003G346200--Sobic004G227000 Sobic010G161300 Sobic010G161300 Sobic003G346200--Sobic010G161300 Sobic003G346200--Sobic002G056300 Sobic006G280300 Sobic006G280300 Sobic003G346200--Sobic006G280300 Sobic006G278400 Sobic006G278400 Sobic003G346200--Sobic006G278400 Sobic004G236500 Sobic004G236500 Sobic003G346200--Sobic004G236500 Sobic003G346200--Sobic008G031600 Sobic008G163800 Sobic008G163800 Sobic003G346200--Sobic008G163800 Sobic010G045300 Sobic010G045300 Sobic005G022600--Sobic010G045300 Sobic005G022600--Sobic003G081400 Sobic010G068300 Sobic010G068300 Sobic005G022600--Sobic010G068300 Sobic009G039400 Sobic009G039400 Sobic005G022600--Sobic009G039400 Sobic010G029200 Sobic010G029200 Sobic005G022600--Sobic010G029200 Sobic010G208300 Sobic010G208300 Sobic005G022600--Sobic010G208300 Sobic002G188100 Sobic002G188100 Sobic005G022600--Sobic002G188100 Sobic005G022600--Sobic003G201400 Sobic006G167200 Sobic006G167200 Sobic005G022600--Sobic006G167200 Sobic006G053000 Sobic006G053000 Sobic001G362800--Sobic006G053000 Sobic003G230300 Sobic003G230300 Sobic001G362800--Sobic003G230300 Sobic010G189800 Sobic010G189800 Sobic001G362800--Sobic010G189800 Sobic001G362800--Sobic004G300500 Sobic001G362800--Sobic004G192700 Sobic010G073300 Sobic010G073300 Sobic001G362800--Sobic010G073300 Sobic002G263900 Sobic002G263900 Sobic001G362800--Sobic002G263900 Sobic001G362800--SobicK044200 Sobic001G362800--Sobic001G429100 Sobic003G201400--Sobic010G114400 Sobic002G156300 Sobic002G156300 Sobic003G201400--Sobic002G156300 Sobic003G201400--Sobic010G224800 Sobic009G031100 Sobic009G031100 Sobic003G201400--Sobic009G031100 Sobic003G201400--Sobic003G109400 Sobic006G197000 Sobic006G197000 Sobic003G201400--Sobic006G197000 Sobic007G001300 Sobic007G001300 Sobic003G201400--Sobic007G001300 Sobic003G201400--Sobic006G172651 Sobic003G201400--Sobic003G081400 Sobic001G148600--Sobic001G402701 Sobic001G148600--Sobic008G031600 Sobic001G148600--Sobic003G201400 Sobic001G460700 Sobic001G460700 Sobic001G148600--Sobic001G460700 Sobic001G148600--Sobic010G161300 Sobic001G148600--Sobic010G029200 Sobic001G148600--Sobic010G045300 Sobic001G148600--Sobic010G208300 Sobic001G148600--Sobic003G081400
Octagon: transcription factors


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