Gene annotation
Transcriptome id Sobic.002G337300.1
Synonym Sb02g036200
Functional annotation expressed protein
UniProt C5XBI3
Pfam PF08879
Panther DB PTHR12549 PTHR12549:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09060 : Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase
RAP-DB (Rice) LOC_Os07g37140.1 : expressed protein
MaizeGDB (Corn) Zm00025a048366 , Zm00025a014894
Brachypodium KQK15789
Barley HORVU2Hr1G041550.5 , HORVU2Hr1G041550.4 , HORVU2Hr1G041550.1 , HORVU2Hr1G041550.2
Wheat TraesCS2D02G209000 , TraesCS2A02G207000
Populus -


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cDNA sequences
Sobic.002G337300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
2 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R
3 Sobic.007G050400 - K12811: DDX46, ATP-dependent RNA helicase DDX46/PRP5
4 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
5 Sobic.003G408800 DEK C terminal domain containing protein, expressed K17046: protein DEK
6 Sobic.002G297800 growth regulating factor protein, putative, expressed -
7 Sobic.007G156101 - -
8 Sobic.003G176900 BAH domain containing protein, expressed -
9 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
10 Sobic.002G018901 - -
11 Sobic.007G159800 DNA binding protein, putative, expressed -
12 Sobic.001G017900 FAD binding protein, putative, expressed -
13 Sobic.008G163700 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
14 Sobic.004G354700 PCF-like (ClassI) Subclade 1 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
15 Sobic.007G155400 remorin C-terminal domain containing protein, putative, expressed -
16 Sobic.006G004000 - -
17 Sobic.002G166500 protein phosphatase 2C, putative, expressed K17500: integrin-linked kinase-associated serine/threonine phosphatase 2C
18 Sobic.009G213300 OsPOP10 - Putative Prolyl Oligopeptidase homologue, expressed -
19 Sobic.004G134500 expressed protein -
20 Sobic.003G060400 transcription regulator, putative, expressed -


Gene co-expression network
sample Sobic002G337300 Sobic002G337300 Sobic001G423700 Sobic001G423700 Sobic002G337300--Sobic001G423700 Sobic007G017400 Sobic007G017400 Sobic002G337300--Sobic007G017400 Sobic007G050400 Sobic007G050400 Sobic002G337300--Sobic007G050400 Sobic001G237700 Sobic001G237700 Sobic002G337300--Sobic001G237700 Sobic003G408800 Sobic003G408800 Sobic002G337300--Sobic003G408800 Sobic002G297800 Sobic002G297800 Sobic002G337300--Sobic002G297800 Sobic007G156101 Sobic007G156101 Sobic002G337300--Sobic007G156101 Sobic003G176900 Sobic003G176900 Sobic002G337300--Sobic003G176900 Sobic006G204200 Sobic006G204200 Sobic002G337300--Sobic006G204200 Sobic006G080300 Sobic006G080300 Sobic001G423700--Sobic006G080300 Sobic001G423700--Sobic001G237700 Sobic005G195800 Sobic005G195800 Sobic001G423700--Sobic005G195800 Sobic001G423700--Sobic002G337300 Sobic001G206100 Sobic001G206100 Sobic001G423700--Sobic001G206100 Sobic004G213000 Sobic004G213000 Sobic001G423700--Sobic004G213000 Sobic002G166500 Sobic002G166500 Sobic001G423700--Sobic002G166500 Sobic002G161000 Sobic002G161000 Sobic001G423700--Sobic002G161000 Sobic001G257300 Sobic001G257300 Sobic001G423700--Sobic001G257300 Sobic007G017400--Sobic007G156101 Sobic007G017400--Sobic001G237700 Sobic007G017400--Sobic002G337300 Sobic004G134500 Sobic004G134500 Sobic007G017400--Sobic004G134500 Sobic003G267900 Sobic003G267900 Sobic007G017400--Sobic003G267900 Sobic001G017900 Sobic001G017900 Sobic007G017400--Sobic001G017900 Sobic007G017400--Sobic001G423700 Sobic007G017400--Sobic003G408800 Sobic007G159800 Sobic007G159800 Sobic007G017400--Sobic007G159800 Sobic007G050400--Sobic001G237700 Sobic010G269500 Sobic010G269500 Sobic007G050400--Sobic010G269500 Sobic007G050400--Sobic002G337300 Sobic007G050400--Sobic001G423700 Sobic003G037900 Sobic003G037900 Sobic007G050400--Sobic003G037900 Sobic007G050400--Sobic004G134500 Sobic004G327400 Sobic004G327400 Sobic007G050400--Sobic004G327400 Sobic007G013500 Sobic007G013500 Sobic007G050400--Sobic007G013500 Sobic009G255300 Sobic009G255300 Sobic007G050400--Sobic009G255300 Sobic001G237700--Sobic001G423700 Sobic001G237700--Sobic007G017400 Sobic001G237700--Sobic005G195800 Sobic001G237700--Sobic007G050400 Sobic002G425800 Sobic002G425800 Sobic001G237700--Sobic002G425800 Sobic001G237700--Sobic004G327400 Sobic001G237700--Sobic002G337300 Sobic004G354700 Sobic004G354700 Sobic001G237700--Sobic004G354700 Sobic001G237700--Sobic002G166500 Sobic003G408800--Sobic001G423700 Sobic003G408800--Sobic002G337300 Sobic003G408800--Sobic007G017400 Sobic003G408800--Sobic002G297800 Sobic003G408800--Sobic002G425800 Sobic009G213300 Sobic009G213300 Sobic003G408800--Sobic009G213300 Sobic003G408800--Sobic001G237700 Sobic001G056300 Sobic001G056300 Sobic003G408800--Sobic001G056300 Sobic002G049000 Sobic002G049000 Sobic003G408800--Sobic002G049000 Sobic002G297800--Sobic002G049000 Sobic003G204000 Sobic003G204000 Sobic002G297800--Sobic003G204000 Sobic002G061400 Sobic002G061400 Sobic002G297800--Sobic002G061400 Sobic008G068800 Sobic008G068800 Sobic002G297800--Sobic008G068800 Sobic009G231300 Sobic009G231300 Sobic002G297800--Sobic009G231300 Sobic009G257300 Sobic009G257300 Sobic002G297800--Sobic009G257300 Sobic004G212800 Sobic004G212800 Sobic002G297800--Sobic004G212800 Sobic002G313300 Sobic002G313300 Sobic002G297800--Sobic002G313300 Sobic009G059600 Sobic009G059600 Sobic002G297800--Sobic009G059600 Sobic007G156101--Sobic003G267900 Sobic007G156101--Sobic001G017900 Sobic007G156101--Sobic007G017400 Sobic002G285300 Sobic002G285300 Sobic007G156101--Sobic002G285300 Sobic006G192400 Sobic006G192400 Sobic007G156101--Sobic006G192400 Sobic008G163700 Sobic008G163700 Sobic007G156101--Sobic008G163700 Sobic007G156101--Sobic007G159800 Sobic004G284400 Sobic004G284400 Sobic007G156101--Sobic004G284400 Sobic007G156101--Sobic002G337300 Sobic003G176900--Sobic002G337300 Sobic003G176900--Sobic009G213300 Sobic003G176900--Sobic007G050400 Sobic003G176900--Sobic003G408800 Sobic001G316700 Sobic001G316700 Sobic003G176900--Sobic001G316700 Sobic003G176900--Sobic002G425800 Sobic003G176900--Sobic009G255300 Sobic006G278800 Sobic006G278800 Sobic003G176900--Sobic006G278800 Sobic003G176900--Sobic002G285300 Sobic002G376800 Sobic002G376800 Sobic006G204200--Sobic002G376800 Sobic003G057800 Sobic003G057800 Sobic006G204200--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic006G204200--Sobic001G479500 Sobic004G016500 Sobic004G016500 Sobic006G204200--Sobic004G016500 Sobic004G315800 Sobic004G315800 Sobic006G204200--Sobic004G315800 Sobic002G330400 Sobic002G330400 Sobic006G204200--Sobic002G330400 Sobic008G161401 Sobic008G161401 Sobic006G204200--Sobic008G161401 Sobic004G020401 Sobic004G020401 Sobic006G204200--Sobic004G020401 Sobic010G248200 Sobic010G248200 Sobic006G204200--Sobic010G248200
Octagon: transcription factors


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