Gene annotation
Transcriptome id Sobic.001G237700.1
Synonym Sb01g021020
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5X0H7
Pfam PF00076 PF15519 PF13893
Panther DB PTHR24012:SF361 PTHR24012
NCBI CDD KOG0147; Transcriptional coactivator CAPER (RRM superfamily)
KEGG Orthology K13091; RBM39, RNA-binding protein 39
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G09880 : Splicing factor, CC1-like
RAP-DB (Rice) LOC_Os03g05830.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a017742 , Zm00025a006807
Brachypodium KQJ96858 , KQK23594
Barley HORVU1Hr1G036640.10 , HORVU1Hr1G036640.1 , HORVU1Hr1G036640.2 , HORVU1Hr1G036640.3 , HORVU1Hr1G036640.4 , HORVU1Hr1G036640.5 , HORVU1Hr1G036640.6 , HORVU1Hr1G036640.7 , HORVU1Hr1G036640.8 , HORVU1Hr1G036640.9 , HORVU1Hr1G036640.23 , HORVU1Hr1G036640.22 , HORVU1Hr1G036640.21 , HORVU1Hr1G036640.20 , HORVU1Hr1G036640.26 , HORVU1Hr1G036640.25 , HORVU1Hr1G036640.24 , HORVU1Hr1G036640.18 , HORVU1Hr1G036640.19 , HORVU1Hr1G036640.12 , HORVU1Hr1G036640.13 , HORVU1Hr1G036640.11 , HORVU1Hr1G036640.16 , HORVU1Hr1G036640.17 , HORVU1Hr1G036640.14 , HORVU1Hr1G036640.15
Wheat TraesCS1A02G130800 , TraesCS1B02G156800 , TraesCS1B02G156800 , TraesCS1D02G139100 , TraesCS4B02G269900 , TraesCS4B02G269900 , TraesCS4B02G269900
Populus -


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cDNA sequences
Sobic.001G237700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
2 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R
3 Sobic.005G195800 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
4 Sobic.007G050400 - K12811: DDX46, ATP-dependent RNA helicase DDX46/PRP5
5 Sobic.002G425800 protein transport protein, putative, expressed -
6 Sobic.004G327400 zinc finger CCCH-type with G patch domain-containing protein, putative, expressed -
7 Sobic.002G337300 expressed protein -
8 Sobic.004G354700 PCF-like (ClassI) Subclade 1 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
9 Sobic.002G166500 protein phosphatase 2C, putative, expressed K17500: integrin-linked kinase-associated serine/threonine phosphatase 2C
10 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
11 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
12 Sobic.003G408800 DEK C terminal domain containing protein, expressed K17046: protein DEK
13 Sobic.003G259901 - -
14 Sobic.001G161800 F-box/LRR domain containing protein, putative, expressed -
15 Sobic.003G241800 - -
16 Sobic.002G144933 - -
17 Sobic.009G014400 expressed protein -
18 Sobic.003G223200 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
19 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
20 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa


Gene co-expression network
sample Sobic001G237700 Sobic001G237700 Sobic001G423700 Sobic001G423700 Sobic001G237700--Sobic001G423700 Sobic007G017400 Sobic007G017400 Sobic001G237700--Sobic007G017400 Sobic005G195800 Sobic005G195800 Sobic001G237700--Sobic005G195800 Sobic007G050400 Sobic007G050400 Sobic001G237700--Sobic007G050400 Sobic002G425800 Sobic002G425800 Sobic001G237700--Sobic002G425800 Sobic004G327400 Sobic004G327400 Sobic001G237700--Sobic004G327400 Sobic002G337300 Sobic002G337300 Sobic001G237700--Sobic002G337300 Sobic004G354700 Sobic004G354700 Sobic001G237700--Sobic004G354700 Sobic002G166500 Sobic002G166500 Sobic001G237700--Sobic002G166500 Sobic006G080300 Sobic006G080300 Sobic001G423700--Sobic006G080300 Sobic001G423700--Sobic001G237700 Sobic001G423700--Sobic005G195800 Sobic001G423700--Sobic002G337300 Sobic001G206100 Sobic001G206100 Sobic001G423700--Sobic001G206100 Sobic004G213000 Sobic004G213000 Sobic001G423700--Sobic004G213000 Sobic001G423700--Sobic002G166500 Sobic002G161000 Sobic002G161000 Sobic001G423700--Sobic002G161000 Sobic001G257300 Sobic001G257300 Sobic001G423700--Sobic001G257300 Sobic007G156101 Sobic007G156101 Sobic007G017400--Sobic007G156101 Sobic007G017400--Sobic001G237700 Sobic007G017400--Sobic002G337300 Sobic004G134500 Sobic004G134500 Sobic007G017400--Sobic004G134500 Sobic003G267900 Sobic003G267900 Sobic007G017400--Sobic003G267900 Sobic001G017900 Sobic001G017900 Sobic007G017400--Sobic001G017900 Sobic007G017400--Sobic001G423700 Sobic003G408800 Sobic003G408800 Sobic007G017400--Sobic003G408800 Sobic007G159800 Sobic007G159800 Sobic007G017400--Sobic007G159800 Sobic002G144933 Sobic002G144933 Sobic005G195800--Sobic002G144933 Sobic001G094000 Sobic001G094000 Sobic005G195800--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic005G195800--Sobic002G157000 Sobic003G170100 Sobic003G170100 Sobic005G195800--Sobic003G170100 Sobic001G420200 Sobic001G420200 Sobic005G195800--Sobic001G420200 Sobic001G303675 Sobic001G303675 Sobic005G195800--Sobic001G303675 Sobic008G173900 Sobic008G173900 Sobic005G195800--Sobic008G173900 Sobic009G178800 Sobic009G178800 Sobic005G195800--Sobic009G178800 Sobic003G268300 Sobic003G268300 Sobic005G195800--Sobic003G268300 Sobic007G050400--Sobic001G237700 Sobic010G269500 Sobic010G269500 Sobic007G050400--Sobic010G269500 Sobic007G050400--Sobic002G337300 Sobic007G050400--Sobic001G423700 Sobic003G037900 Sobic003G037900 Sobic007G050400--Sobic003G037900 Sobic007G050400--Sobic004G134500 Sobic007G050400--Sobic004G327400 Sobic007G013500 Sobic007G013500 Sobic007G050400--Sobic007G013500 Sobic009G255300 Sobic009G255300 Sobic007G050400--Sobic009G255300 Sobic002G425800--Sobic005G195800 Sobic002G425800--Sobic001G237700 Sobic005G077466 Sobic005G077466 Sobic002G425800--Sobic005G077466 Sobic002G144966 Sobic002G144966 Sobic002G425800--Sobic002G144966 Sobic002G425800--Sobic001G423700 Sobic006G262200 Sobic006G262200 Sobic002G425800--Sobic006G262200 Sobic006G210100 Sobic006G210100 Sobic002G425800--Sobic006G210100 Sobic001G111900 Sobic001G111900 Sobic002G425800--Sobic001G111900 Sobic005G110475 Sobic005G110475 Sobic002G425800--Sobic005G110475 Sobic004G327400--Sobic001G237700 Sobic009G209300 Sobic009G209300 Sobic004G327400--Sobic009G209300 Sobic004G327400--Sobic001G423700 Sobic009G191100 Sobic009G191100 Sobic004G327400--Sobic009G191100 Sobic010G255300 Sobic010G255300 Sobic004G327400--Sobic010G255300 Sobic001G161800 Sobic001G161800 Sobic004G327400--Sobic001G161800 Sobic004G327400--Sobic007G050400 Sobic004G182900 Sobic004G182900 Sobic004G327400--Sobic004G182900 Sobic005G063000 Sobic005G063000 Sobic004G327400--Sobic005G063000 Sobic002G337300--Sobic001G423700 Sobic002G337300--Sobic007G017400 Sobic002G337300--Sobic007G050400 Sobic002G337300--Sobic001G237700 Sobic002G337300--Sobic003G408800 Sobic002G297800 Sobic002G297800 Sobic002G337300--Sobic002G297800 Sobic002G337300--Sobic007G156101 Sobic003G176900 Sobic003G176900 Sobic002G337300--Sobic003G176900 Sobic006G204200 Sobic006G204200 Sobic002G337300--Sobic006G204200 Sobic009G125500 Sobic009G125500 Sobic004G354700--Sobic009G125500 Sobic004G354700--Sobic001G237700 Sobic008G163700 Sobic008G163700 Sobic004G354700--Sobic008G163700 Sobic007G204400 Sobic007G204400 Sobic004G354700--Sobic007G204400 Sobic002G285300 Sobic002G285300 Sobic004G354700--Sobic002G285300 Sobic004G354700--Sobic001G017900 Sobic004G354700--Sobic007G017400 Sobic010G036000 Sobic010G036000 Sobic004G354700--Sobic010G036000 Sobic004G354700--Sobic002G337300 Sobic002G166500--Sobic006G080300 Sobic003G259901 Sobic003G259901 Sobic002G166500--Sobic003G259901 Sobic002G166500--Sobic006G210100 Sobic002G106100 Sobic002G106100 Sobic002G166500--Sobic002G106100 Sobic008G116500 Sobic008G116500 Sobic002G166500--Sobic008G116500 Sobic002G166500--Sobic002G157000 Sobic007G217500 Sobic007G217500 Sobic002G166500--Sobic007G217500 Sobic002G166500--Sobic001G206100 Sobic002G166500--Sobic001G257300
Octagon: transcription factors


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