Gene annotation
Transcriptome id Sobic.004G327400.1
Synonym Sb04g035680
Functional annotation zinc finger CCCH-type with G patch domain-containing protein, putative, expressed
UniProt A0A109NDH6 , C5XUD7
Pfam PF01585
Panther DB PTHR23329 PTHR23329:SF2
NCBI CDD KOG2185; Predicted RNA-processing protein, contains G-patch domain
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G24830 : zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
RAP-DB (Rice) LOC_Os02g55000.1 : zinc finger CCCH-type with G patch domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022441
Brachypodium KQK01104 , KQK01103 , KQK01102
Barley HORVU6Hr1G084530.2 , HORVU6Hr1G084530.3
Wheat TraesCS6D02G336200
Populus -


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cDNA sequences
Sobic.004G327400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
2 Sobic.009G209300 starch synthase, putative, expressed -
3 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
4 Sobic.009G191100 expressed protein -
5 Sobic.010G255300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
6 Sobic.001G161800 F-box/LRR domain containing protein, putative, expressed -
7 Sobic.007G050400 - K12811: DDX46, ATP-dependent RNA helicase DDX46/PRP5
8 Sobic.004G182900 PHD finger protein, putative, expressed -
9 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
10 Sobic.003G241800 - -
11 Sobic.010G002700 expressed protein -
12 Sobic.004G178100 uncharacterized oxidoreductase yoxD, putative, expressed -
13 Sobic.007G074600 tetratricopeptide repeat domain containing protein, expressed K15201: GTP3C3, general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
14 Sobic.002G006600 -(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K14272: glutamate--glyoxylate aminotransferase
15 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
16 Sobic.001G468700 expressed protein -
17 Sobic.001G456900 expressed protein -
18 Sobic.001G381900 PRC-barrel domain protein, putative, expressed -
19 Sobic.001G533700 STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
20 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G327400 Sobic004G327400 Sobic001G237700 Sobic001G237700 Sobic004G327400--Sobic001G237700 Sobic009G209300 Sobic009G209300 Sobic004G327400--Sobic009G209300 Sobic001G423700 Sobic001G423700 Sobic004G327400--Sobic001G423700 Sobic009G191100 Sobic009G191100 Sobic004G327400--Sobic009G191100 Sobic010G255300 Sobic010G255300 Sobic004G327400--Sobic010G255300 Sobic001G161800 Sobic001G161800 Sobic004G327400--Sobic001G161800 Sobic007G050400 Sobic007G050400 Sobic004G327400--Sobic007G050400 Sobic004G182900 Sobic004G182900 Sobic004G327400--Sobic004G182900 Sobic005G063000 Sobic005G063000 Sobic004G327400--Sobic005G063000 Sobic001G237700--Sobic001G423700 Sobic007G017400 Sobic007G017400 Sobic001G237700--Sobic007G017400 Sobic005G195800 Sobic005G195800 Sobic001G237700--Sobic005G195800 Sobic001G237700--Sobic007G050400 Sobic002G425800 Sobic002G425800 Sobic001G237700--Sobic002G425800 Sobic001G237700--Sobic004G327400 Sobic002G337300 Sobic002G337300 Sobic001G237700--Sobic002G337300 Sobic004G354700 Sobic004G354700 Sobic001G237700--Sobic004G354700 Sobic002G166500 Sobic002G166500 Sobic001G237700--Sobic002G166500 Sobic003G332800 Sobic003G332800 Sobic009G209300--Sobic003G332800 Sobic006G216800 Sobic006G216800 Sobic009G209300--Sobic006G216800 Sobic003G429650 Sobic003G429650 Sobic009G209300--Sobic003G429650 Sobic006G182900 Sobic006G182900 Sobic009G209300--Sobic006G182900 Sobic006G048500 Sobic006G048500 Sobic009G209300--Sobic006G048500 Sobic007G116200 Sobic007G116200 Sobic009G209300--Sobic007G116200 Sobic002G006600 Sobic002G006600 Sobic009G209300--Sobic002G006600 Sobic003G148000 Sobic003G148000 Sobic009G209300--Sobic003G148000 Sobic001G036050 Sobic001G036050 Sobic009G209300--Sobic001G036050 Sobic006G080300 Sobic006G080300 Sobic001G423700--Sobic006G080300 Sobic001G423700--Sobic001G237700 Sobic001G423700--Sobic005G195800 Sobic001G423700--Sobic002G337300 Sobic001G206100 Sobic001G206100 Sobic001G423700--Sobic001G206100 Sobic004G213000 Sobic004G213000 Sobic001G423700--Sobic004G213000 Sobic001G423700--Sobic002G166500 Sobic002G161000 Sobic002G161000 Sobic001G423700--Sobic002G161000 Sobic001G257300 Sobic001G257300 Sobic001G423700--Sobic001G257300 Sobic002G358500 Sobic002G358500 Sobic009G191100--Sobic002G358500 Sobic002G121600 Sobic002G121600 Sobic009G191100--Sobic002G121600 Sobic007G113800 Sobic007G113800 Sobic009G191100--Sobic007G113800 Sobic009G191100--Sobic004G182900 Sobic004G299000 Sobic004G299000 Sobic009G191100--Sobic004G299000 Sobic002G031600 Sobic002G031600 Sobic009G191100--Sobic002G031600 Sobic007G173200 Sobic007G173200 Sobic009G191100--Sobic007G173200 Sobic002G228700 Sobic002G228700 Sobic009G191100--Sobic002G228700 Sobic004G258700 Sobic004G258700 Sobic009G191100--Sobic004G258700 Sobic007G105500 Sobic007G105500 Sobic010G255300--Sobic007G105500 Sobic010G249700 Sobic010G249700 Sobic010G255300--Sobic010G249700 Sobic009G015100 Sobic009G015100 Sobic010G255300--Sobic009G015100 Sobic005G101200 Sobic005G101200 Sobic010G255300--Sobic005G101200 Sobic003G367500 Sobic003G367500 Sobic010G255300--Sobic003G367500 Sobic002G404800 Sobic002G404800 Sobic010G255300--Sobic002G404800 Sobic005G206300 Sobic005G206300 Sobic010G255300--Sobic005G206300 Sobic004G356400 Sobic004G356400 Sobic010G255300--Sobic004G356400 Sobic003G036200 Sobic003G036200 Sobic010G255300--Sobic003G036200 Sobic002G408200 Sobic002G408200 Sobic001G161800--Sobic002G408200 Sobic010G279450 Sobic010G279450 Sobic001G161800--Sobic010G279450 Sobic010G243900 Sobic010G243900 Sobic001G161800--Sobic010G243900 Sobic003G052200 Sobic003G052200 Sobic001G161800--Sobic003G052200 Sobic008G028700 Sobic008G028700 Sobic001G161800--Sobic008G028700 Sobic009G024000 Sobic009G024000 Sobic001G161800--Sobic009G024000 Sobic002G405800 Sobic002G405800 Sobic001G161800--Sobic002G405800 Sobic001G161800--Sobic004G258700 Sobic008G113100 Sobic008G113100 Sobic001G161800--Sobic008G113100 Sobic007G050400--Sobic001G237700 Sobic010G269500 Sobic010G269500 Sobic007G050400--Sobic010G269500 Sobic007G050400--Sobic002G337300 Sobic007G050400--Sobic001G423700 Sobic003G037900 Sobic003G037900 Sobic007G050400--Sobic003G037900 Sobic004G134500 Sobic004G134500 Sobic007G050400--Sobic004G134500 Sobic007G050400--Sobic004G327400 Sobic007G013500 Sobic007G013500 Sobic007G050400--Sobic007G013500 Sobic009G255300 Sobic009G255300 Sobic007G050400--Sobic009G255300 Sobic004G294700 Sobic004G294700 Sobic004G182900--Sobic004G294700 Sobic004G182900--Sobic009G191100 Sobic007G136800 Sobic007G136800 Sobic004G182900--Sobic007G136800 Sobic004G178100 Sobic004G178100 Sobic004G182900--Sobic004G178100 Sobic006G031800 Sobic006G031800 Sobic004G182900--Sobic006G031800 Sobic004G183000 Sobic004G183000 Sobic004G182900--Sobic004G183000 Sobic004G182900--Sobic002G358500 Sobic010G016900 Sobic010G016900 Sobic004G182900--Sobic010G016900 Sobic010G043800 Sobic010G043800 Sobic004G182900--Sobic010G043800 Sobic004G211600 Sobic004G211600 Sobic005G063000--Sobic004G211600 Sobic005G204200 Sobic005G204200 Sobic005G063000--Sobic005G204200 Sobic009G121000 Sobic009G121000 Sobic005G063000--Sobic009G121000 Sobic005G001700 Sobic005G001700 Sobic005G063000--Sobic005G001700 Sobic003G085100 Sobic003G085100 Sobic005G063000--Sobic003G085100 Sobic003G160800 Sobic003G160800 Sobic005G063000--Sobic003G160800 Sobic010G214100 Sobic010G214100 Sobic005G063000--Sobic010G214100 Sobic007G103400 Sobic007G103400 Sobic005G063000--Sobic007G103400 Sobic005G063000--Sobic010G043800
Octagon: transcription factors


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