Gene annotation
Transcriptome id Sobic.001G423700.3,Sobic.001G423700.2,Sobic.001G423700.1
Synonym
Functional annotation -
UniProt A0A1B6QP57 , A0A1B6QP73
Pfam PF01480
Panther DB PTHR23148
NCBI CDD -
KEGG Orthology K13171; SRRM1, serine/arginine repetitive matrix protein 1
Gene Ontology GO:0006397; mRNA processing


Orthologs (automatic annotation)
TAIR AT2G29210 : splicing factor PWI domain-containing protein
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a052774 , Zm00025a001795
Brachypodium KQK22373 , KQK22374
Barley -
Wheat TraesCS4A02G094800 , TraesCS4A02G094800 , TraesCS4B02G209700 , TraesCS4D02G210400 , TraesCS4B02G209700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G080300 SET domain containing protein, expressed -
2 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
3 Sobic.005G195800 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
4 Sobic.002G337300 expressed protein -
5 Sobic.001G206100 expressed protein -
6 Sobic.004G213000 AT hook motif family protein, expressed -
7 Sobic.002G166500 protein phosphatase 2C, putative, expressed K17500: integrin-linked kinase-associated serine/threonine phosphatase 2C
8 Sobic.002G161000 RNA recognition motif containing protein, expressed -
9 Sobic.001G257300 OsFBL52 - F-box domain and LRR containing protein, expressed -
10 Sobic.003G268300 surp module family protein, putative, expressed -
11 Sobic.001G477800 expressed protein -
12 Sobic.003G241800 - -
13 Sobic.007G000100 PWWP domain containing protein, expressed -
14 Sobic.007G178700 - -
15 Sobic.001G094000 expressed protein -
16 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
17 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
18 Sobic.002G313300 bromodomain domain containing protein, expressed -
19 Sobic.003G170100 - -
20 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26


Gene co-expression network
sample Sobic001G423700 Sobic001G423700 Sobic006G080300 Sobic006G080300 Sobic001G423700--Sobic006G080300 Sobic001G237700 Sobic001G237700 Sobic001G423700--Sobic001G237700 Sobic005G195800 Sobic005G195800 Sobic001G423700--Sobic005G195800 Sobic002G337300 Sobic002G337300 Sobic001G423700--Sobic002G337300 Sobic001G206100 Sobic001G206100 Sobic001G423700--Sobic001G206100 Sobic004G213000 Sobic004G213000 Sobic001G423700--Sobic004G213000 Sobic002G166500 Sobic002G166500 Sobic001G423700--Sobic002G166500 Sobic002G161000 Sobic002G161000 Sobic001G423700--Sobic002G161000 Sobic001G257300 Sobic001G257300 Sobic001G423700--Sobic001G257300 Sobic003G268300 Sobic003G268300 Sobic006G080300--Sobic003G268300 Sobic004G031700 Sobic004G031700 Sobic006G080300--Sobic004G031700 Sobic001G094000 Sobic001G094000 Sobic006G080300--Sobic001G094000 Sobic001G477800 Sobic001G477800 Sobic006G080300--Sobic001G477800 Sobic002G313300 Sobic002G313300 Sobic006G080300--Sobic002G313300 Sobic006G080300--Sobic001G206100 Sobic002G157000 Sobic002G157000 Sobic006G080300--Sobic002G157000 Sobic003G170100 Sobic003G170100 Sobic006G080300--Sobic003G170100 Sobic006G080300--Sobic001G257300 Sobic001G237700--Sobic001G423700 Sobic007G017400 Sobic007G017400 Sobic001G237700--Sobic007G017400 Sobic001G237700--Sobic005G195800 Sobic007G050400 Sobic007G050400 Sobic001G237700--Sobic007G050400 Sobic002G425800 Sobic002G425800 Sobic001G237700--Sobic002G425800 Sobic004G327400 Sobic004G327400 Sobic001G237700--Sobic004G327400 Sobic001G237700--Sobic002G337300 Sobic004G354700 Sobic004G354700 Sobic001G237700--Sobic004G354700 Sobic001G237700--Sobic002G166500 Sobic002G144933 Sobic002G144933 Sobic005G195800--Sobic002G144933 Sobic005G195800--Sobic001G094000 Sobic005G195800--Sobic002G157000 Sobic005G195800--Sobic003G170100 Sobic001G420200 Sobic001G420200 Sobic005G195800--Sobic001G420200 Sobic001G303675 Sobic001G303675 Sobic005G195800--Sobic001G303675 Sobic008G173900 Sobic008G173900 Sobic005G195800--Sobic008G173900 Sobic009G178800 Sobic009G178800 Sobic005G195800--Sobic009G178800 Sobic005G195800--Sobic003G268300 Sobic002G337300--Sobic001G423700 Sobic002G337300--Sobic007G017400 Sobic002G337300--Sobic007G050400 Sobic002G337300--Sobic001G237700 Sobic003G408800 Sobic003G408800 Sobic002G337300--Sobic003G408800 Sobic002G297800 Sobic002G297800 Sobic002G337300--Sobic002G297800 Sobic007G156101 Sobic007G156101 Sobic002G337300--Sobic007G156101 Sobic003G176900 Sobic003G176900 Sobic002G337300--Sobic003G176900 Sobic006G204200 Sobic006G204200 Sobic002G337300--Sobic006G204200 Sobic001G206100--Sobic001G257300 Sobic006G013500 Sobic006G013500 Sobic001G206100--Sobic006G013500 Sobic002G320500 Sobic002G320500 Sobic001G206100--Sobic002G320500 Sobic001G206100--Sobic006G080300 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic001G206100--Sobic002G161000 Sobic004G271000 Sobic004G271000 Sobic004G213000--Sobic004G271000 Sobic004G213000--Sobic001G206100 Sobic006G032400 Sobic006G032400 Sobic004G213000--Sobic006G032400 Sobic004G213000--Sobic006G080300 Sobic002G248400 Sobic002G248400 Sobic004G213000--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G213000--Sobic003G108700 Sobic004G213000--Sobic002G157000 Sobic002G151600 Sobic002G151600 Sobic004G213000--Sobic002G151600 Sobic004G213000--Sobic001G257300 Sobic002G166500--Sobic006G080300 Sobic003G259901 Sobic003G259901 Sobic002G166500--Sobic003G259901 Sobic006G210100 Sobic006G210100 Sobic002G166500--Sobic006G210100 Sobic002G106100 Sobic002G106100 Sobic002G166500--Sobic002G106100 Sobic008G116500 Sobic008G116500 Sobic002G166500--Sobic008G116500 Sobic002G166500--Sobic002G157000 Sobic007G217500 Sobic007G217500 Sobic002G166500--Sobic007G217500 Sobic002G166500--Sobic001G206100 Sobic002G166500--Sobic001G257300 Sobic002G161000--Sobic001G206100 Sobic007G137900 Sobic007G137900 Sobic002G161000--Sobic007G137900 Sobic003G200200 Sobic003G200200 Sobic002G161000--Sobic003G200200 Sobic002G161000--Sobic001G094000 Sobic002G161000--Sobic001G257300 Sobic002G161000--Sobic003G170100 Sobic001G306900 Sobic001G306900 Sobic002G161000--Sobic001G306900 Sobic006G046700 Sobic006G046700 Sobic002G161000--Sobic006G046700 Sobic001G251700 Sobic001G251700 Sobic002G161000--Sobic001G251700 Sobic001G257300--Sobic001G206100 Sobic001G257300--Sobic006G013500 Sobic001G257300--Sobic003G170100 Sobic001G257300--Sobic006G080300 Sobic001G257300--Sobic003G200200 Sobic002G001600 Sobic002G001600 Sobic001G257300--Sobic002G001600 Sobic001G257300--Sobic004G213000 Sobic001G257300--Sobic002G161000 Sobic001G162300 Sobic001G162300 Sobic001G257300--Sobic001G162300
Octagon: transcription factors


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