Gene annotation
Transcriptome id Sobic.003G408800.1
Synonym Sb03g044330
Functional annotation DEK C terminal domain containing protein, expressed
UniProt C5XGD7
Pfam PF08766
Panther DB PTHR13468 PTHR13468:SF6
NCBI CDD KOG2266; Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain
KEGG Orthology K17046; protein DEK
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48710 : DEK domain-containing chromatin associated protein
RAP-DB (Rice) LOC_Os01g70020.1 : DEK C terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039264 , Zm00025a026221
Brachypodium KQK11292
Barley HORVU3Hr1G095450.1 , HORVU3Hr1G095450.2
Wheat TraesCS3D02G429200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
2 Sobic.002G337300 expressed protein -
3 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R
4 Sobic.002G297800 growth regulating factor protein, putative, expressed -
5 Sobic.002G425800 protein transport protein, putative, expressed -
6 Sobic.009G213300 OsPOP10 - Putative Prolyl Oligopeptidase homologue, expressed -
7 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
8 Sobic.001G056300 BHLH transcription factor, putative, expressed -
9 Sobic.002G049000 frigida, putative, expressed -
10 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
11 Sobic.007G072800 OsFBX275 - F-box domain containing protein, expressed -
12 Sobic.006G009400 G-patch domain containing protein, expressed -
13 Sobic.003G060400 transcription regulator, putative, expressed -
14 Sobic.005G195800 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
15 Sobic.007G159800 DNA binding protein, putative, expressed -
16 Sobic.009G239250 - -
17 Sobic.009G045700 E3 ubiquitin-protein ligase SINA-like, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
18 Sobic.003G176900 BAH domain containing protein, expressed -
19 Sobic.006G210100 zinc finger domain, LSD1 subclass family protein, expressed -
20 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -


Gene co-expression network
sample Sobic003G408800 Sobic003G408800 Sobic001G423700 Sobic001G423700 Sobic003G408800--Sobic001G423700 Sobic002G337300 Sobic002G337300 Sobic003G408800--Sobic002G337300 Sobic007G017400 Sobic007G017400 Sobic003G408800--Sobic007G017400 Sobic002G297800 Sobic002G297800 Sobic003G408800--Sobic002G297800 Sobic002G425800 Sobic002G425800 Sobic003G408800--Sobic002G425800 Sobic009G213300 Sobic009G213300 Sobic003G408800--Sobic009G213300 Sobic001G237700 Sobic001G237700 Sobic003G408800--Sobic001G237700 Sobic001G056300 Sobic001G056300 Sobic003G408800--Sobic001G056300 Sobic002G049000 Sobic002G049000 Sobic003G408800--Sobic002G049000 Sobic006G080300 Sobic006G080300 Sobic001G423700--Sobic006G080300 Sobic001G423700--Sobic001G237700 Sobic005G195800 Sobic005G195800 Sobic001G423700--Sobic005G195800 Sobic001G423700--Sobic002G337300 Sobic001G206100 Sobic001G206100 Sobic001G423700--Sobic001G206100 Sobic004G213000 Sobic004G213000 Sobic001G423700--Sobic004G213000 Sobic002G166500 Sobic002G166500 Sobic001G423700--Sobic002G166500 Sobic002G161000 Sobic002G161000 Sobic001G423700--Sobic002G161000 Sobic001G257300 Sobic001G257300 Sobic001G423700--Sobic001G257300 Sobic002G337300--Sobic001G423700 Sobic002G337300--Sobic007G017400 Sobic007G050400 Sobic007G050400 Sobic002G337300--Sobic007G050400 Sobic002G337300--Sobic001G237700 Sobic002G337300--Sobic003G408800 Sobic002G337300--Sobic002G297800 Sobic007G156101 Sobic007G156101 Sobic002G337300--Sobic007G156101 Sobic003G176900 Sobic003G176900 Sobic002G337300--Sobic003G176900 Sobic006G204200 Sobic006G204200 Sobic002G337300--Sobic006G204200 Sobic007G017400--Sobic007G156101 Sobic007G017400--Sobic001G237700 Sobic007G017400--Sobic002G337300 Sobic004G134500 Sobic004G134500 Sobic007G017400--Sobic004G134500 Sobic003G267900 Sobic003G267900 Sobic007G017400--Sobic003G267900 Sobic001G017900 Sobic001G017900 Sobic007G017400--Sobic001G017900 Sobic007G017400--Sobic001G423700 Sobic007G017400--Sobic003G408800 Sobic007G159800 Sobic007G159800 Sobic007G017400--Sobic007G159800 Sobic002G297800--Sobic002G049000 Sobic003G204000 Sobic003G204000 Sobic002G297800--Sobic003G204000 Sobic002G061400 Sobic002G061400 Sobic002G297800--Sobic002G061400 Sobic008G068800 Sobic008G068800 Sobic002G297800--Sobic008G068800 Sobic009G231300 Sobic009G231300 Sobic002G297800--Sobic009G231300 Sobic009G257300 Sobic009G257300 Sobic002G297800--Sobic009G257300 Sobic004G212800 Sobic004G212800 Sobic002G297800--Sobic004G212800 Sobic002G313300 Sobic002G313300 Sobic002G297800--Sobic002G313300 Sobic009G059600 Sobic009G059600 Sobic002G297800--Sobic009G059600 Sobic002G425800--Sobic005G195800 Sobic002G425800--Sobic001G237700 Sobic005G077466 Sobic005G077466 Sobic002G425800--Sobic005G077466 Sobic002G144966 Sobic002G144966 Sobic002G425800--Sobic002G144966 Sobic002G425800--Sobic001G423700 Sobic006G262200 Sobic006G262200 Sobic002G425800--Sobic006G262200 Sobic006G210100 Sobic006G210100 Sobic002G425800--Sobic006G210100 Sobic001G111900 Sobic001G111900 Sobic002G425800--Sobic001G111900 Sobic005G110475 Sobic005G110475 Sobic002G425800--Sobic005G110475 Sobic009G213300--Sobic002G425800 Sobic001G451200 Sobic001G451200 Sobic009G213300--Sobic001G451200 Sobic008G163700 Sobic008G163700 Sobic009G213300--Sobic008G163700 Sobic007G072800 Sobic007G072800 Sobic009G213300--Sobic007G072800 Sobic009G213300--Sobic006G204200 Sobic009G213300--Sobic003G408800 Sobic003G060400 Sobic003G060400 Sobic009G213300--Sobic003G060400 Sobic009G213300--Sobic001G017900 Sobic009G213300--Sobic007G159800 Sobic001G237700--Sobic001G423700 Sobic001G237700--Sobic007G017400 Sobic001G237700--Sobic005G195800 Sobic001G237700--Sobic007G050400 Sobic001G237700--Sobic002G425800 Sobic004G327400 Sobic004G327400 Sobic001G237700--Sobic004G327400 Sobic001G237700--Sobic002G337300 Sobic004G354700 Sobic004G354700 Sobic001G237700--Sobic004G354700 Sobic001G237700--Sobic002G166500 Sobic007G073400 Sobic007G073400 Sobic001G056300--Sobic007G073400 Sobic009G113600 Sobic009G113600 Sobic001G056300--Sobic009G113600 Sobic008G009500 Sobic008G009500 Sobic001G056300--Sobic008G009500 Sobic002G062300 Sobic002G062300 Sobic001G056300--Sobic002G062300 SobicK024000 SobicK024000 Sobic001G056300--SobicK024000 Sobic007G099500 Sobic007G099500 Sobic001G056300--Sobic007G099500 Sobic002G376800 Sobic002G376800 Sobic001G056300--Sobic002G376800 Sobic004G164600 Sobic004G164600 Sobic001G056300--Sobic004G164600 Sobic003G044900 Sobic003G044900 Sobic001G056300--Sobic003G044900 Sobic003G346000 Sobic003G346000 Sobic002G049000--Sobic003G346000 Sobic002G049000--Sobic002G297800 Sobic002G090400 Sobic002G090400 Sobic002G049000--Sobic002G090400 Sobic002G049000--Sobic008G068800 Sobic007G011400 Sobic007G011400 Sobic002G049000--Sobic007G011400 Sobic002G049000--Sobic002G061400 Sobic001G094000 Sobic001G094000 Sobic002G049000--Sobic001G094000 Sobic008G034600 Sobic008G034600 Sobic002G049000--Sobic008G034600 Sobic001G394400 Sobic001G394400 Sobic002G049000--Sobic001G394400
Octagon: transcription factors


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