Gene annotation
Transcriptome id Sobic.007G159800.5
Synonym Sb07g023325
Functional annotation DNA binding protein, putative, expressed
UniProt A0A1B6PI24
Pfam PF03479
Panther DB PTHR31100 PTHR31100:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49700 : Predicted AT-hook DNA-binding family protein
RAP-DB (Rice) LOC_Os09g28930.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a005463
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G038500 ANT1, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
2 Sobic.002G376800 EF hand family protein, putative -
3 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
4 Sobic.009G230400 cytokinin-N-glucosyltransferase 1, putative, expressed -
5 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
6 Sobic.008G105500 ureide permease, putative, expressed -
7 Sobic.001G056300 BHLH transcription factor, putative, expressed -
8 Sobic.008G163700 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
9 Sobic.010G092100 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
10 Sobic.003G357500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
11 Sobic.005G003900 phosphatidate cytidylyltransferase, putative, expressed K15892: farnesol kinase
12 Sobic.002G253500 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
13 Sobic.002G297800 growth regulating factor protein, putative, expressed -
14 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
15 Sobic.004G212800 - -
16 Sobic.008G161401 - -
17 Sobic.010G248200 KID-containing protein, putative, expressed -
18 Sobic.009G113600 - -
19 Sobic.009G002500 polygalacturonase inhibitor precursor, putative, expressed -
20 Sobic.001G361900 ATPase, putative, expressed K08900: mitochondrial chaperone BCS1


Gene co-expression network
sample Sobic007G159800 Sobic007G159800 Sobic001G038500 Sobic001G038500 Sobic007G159800--Sobic001G038500 Sobic002G376800 Sobic002G376800 Sobic007G159800--Sobic002G376800 Sobic003G057800 Sobic003G057800 Sobic007G159800--Sobic003G057800 Sobic009G230400 Sobic009G230400 Sobic007G159800--Sobic009G230400 Sobic006G204200 Sobic006G204200 Sobic007G159800--Sobic006G204200 Sobic008G105500 Sobic008G105500 Sobic007G159800--Sobic008G105500 Sobic001G056300 Sobic001G056300 Sobic007G159800--Sobic001G056300 Sobic008G163700 Sobic008G163700 Sobic007G159800--Sobic008G163700 Sobic010G092100 Sobic010G092100 Sobic007G159800--Sobic010G092100 Sobic001G038500--Sobic010G092100 Sobic001G038500--Sobic007G159800 Sobic001G038500--Sobic006G204200 Sobic002G246600 Sobic002G246600 Sobic001G038500--Sobic002G246600 Sobic001G361900 Sobic001G361900 Sobic001G038500--Sobic001G361900 Sobic001G038500--Sobic003G057800 Sobic003G357500 Sobic003G357500 Sobic001G038500--Sobic003G357500 Sobic003G357600 Sobic003G357600 Sobic001G038500--Sobic003G357600 Sobic001G038500--Sobic008G163700 Sobic002G376900 Sobic002G376900 Sobic002G376800--Sobic002G376900 Sobic008G161401 Sobic008G161401 Sobic002G376800--Sobic008G161401 Sobic010G050600 Sobic010G050600 Sobic002G376800--Sobic010G050600 Sobic005G121800 Sobic005G121800 Sobic002G376800--Sobic005G121800 Sobic009G109450 Sobic009G109450 Sobic002G376800--Sobic009G109450 Sobic009G231300 Sobic009G231300 Sobic002G376800--Sobic009G231300 Sobic002G376800--Sobic003G057800 Sobic009G113600 Sobic009G113600 Sobic002G376800--Sobic009G113600 Sobic002G376800--Sobic006G204200 Sobic001G479500 Sobic001G479500 Sobic003G057800--Sobic001G479500 Sobic003G057800--Sobic003G357500 Sobic010G248200 Sobic010G248200 Sobic003G057800--Sobic010G248200 Sobic003G057800--Sobic008G161401 Sobic004G212800 Sobic004G212800 Sobic003G057800--Sobic004G212800 Sobic005G130200 Sobic005G130200 Sobic003G057800--Sobic005G130200 Sobic007G073400 Sobic007G073400 Sobic003G057800--Sobic007G073400 Sobic004G016500 Sobic004G016500 Sobic003G057800--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic003G057800--Sobic001G046600 Sobic009G230400--Sobic007G159800 Sobic005G003900 Sobic005G003900 Sobic009G230400--Sobic005G003900 Sobic009G230400--Sobic001G056300 Sobic010G267650 Sobic010G267650 Sobic009G230400--Sobic010G267650 Sobic003G296600 Sobic003G296600 Sobic009G230400--Sobic003G296600 Sobic002G253500 Sobic002G253500 Sobic009G230400--Sobic002G253500 Sobic007G156500 Sobic007G156500 Sobic009G230400--Sobic007G156500 Sobic009G230400--Sobic002G376800 Sobic002G108800 Sobic002G108800 Sobic009G230400--Sobic002G108800 Sobic006G204200--Sobic002G376800 Sobic006G204200--Sobic003G057800 Sobic006G204200--Sobic001G479500 Sobic006G204200--Sobic004G016500 Sobic004G315800 Sobic004G315800 Sobic006G204200--Sobic004G315800 Sobic002G330400 Sobic002G330400 Sobic006G204200--Sobic002G330400 Sobic006G204200--Sobic008G161401 Sobic004G020401 Sobic004G020401 Sobic006G204200--Sobic004G020401 Sobic006G204200--Sobic010G248200 Sobic008G105500--Sobic003G357500 Sobic009G002500 Sobic009G002500 Sobic008G105500--Sobic009G002500 Sobic006G020500 Sobic006G020500 Sobic008G105500--Sobic006G020500 Sobic002G285200 Sobic002G285200 Sobic008G105500--Sobic002G285200 Sobic009G078500 Sobic009G078500 Sobic008G105500--Sobic009G078500 Sobic008G105500--Sobic009G231300 Sobic004G076732 Sobic004G076732 Sobic008G105500--Sobic004G076732 Sobic008G105500--Sobic007G073400 Sobic008G105500--Sobic004G212800 Sobic001G056300--Sobic007G073400 Sobic001G056300--Sobic009G113600 Sobic008G009500 Sobic008G009500 Sobic001G056300--Sobic008G009500 Sobic002G062300 Sobic002G062300 Sobic001G056300--Sobic002G062300 SobicK024000 SobicK024000 Sobic001G056300--SobicK024000 Sobic007G099500 Sobic007G099500 Sobic001G056300--Sobic007G099500 Sobic001G056300--Sobic002G376800 Sobic004G164600 Sobic004G164600 Sobic001G056300--Sobic004G164600 Sobic003G044900 Sobic003G044900 Sobic001G056300--Sobic003G044900 Sobic001G017900 Sobic001G017900 Sobic008G163700--Sobic001G017900 Sobic002G285300 Sobic002G285300 Sobic008G163700--Sobic002G285300 Sobic008G163700--Sobic007G159800 Sobic007G156101 Sobic007G156101 Sobic008G163700--Sobic007G156101 Sobic008G163700--Sobic001G038500 Sobic009G255300 Sobic009G255300 Sobic008G163700--Sobic009G255300 Sobic008G163700--Sobic010G092100 Sobic007G017400 Sobic007G017400 Sobic008G163700--Sobic007G017400 Sobic008G163700--Sobic001G361900 Sobic010G092100--Sobic001G038500 Sobic010G092100--Sobic001G361900 Sobic009G010700 Sobic009G010700 Sobic010G092100--Sobic009G010700 Sobic010G092100--Sobic007G159800 Sobic003G178700 Sobic003G178700 Sobic010G092100--Sobic003G178700 Sobic002G376700 Sobic002G376700 Sobic010G092100--Sobic002G376700 Sobic010G092100--Sobic006G204200 Sobic001G084600 Sobic001G084600 Sobic010G092100--Sobic001G084600 Sobic010G092100--Sobic008G163700
Octagon: transcription factors


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