Gene annotation
Transcriptome id Sobic.007G017400.3,Sobic.007G017400.2,Sobic.007G017400.1
Synonym Sb07g001490
Functional annotation APOBEC1 complementation factor, putative, expressed
UniProt A0A1B6PEZ6 , C5YM16
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF406
NCBI CDD KOG0123; Polyadenylate-binding protein (RRM superfamily)
KEGG Orthology K13161; heterogeneous nuclear ribonucleoprotein R
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G00830 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os10g06130.2,LOC_Os10g06130.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a030256
Brachypodium KQJ94861 , KQJ94863 , KQJ94862
Barley HORVU7Hr1G075790.1 , HORVU7Hr1G075790.3 , HORVU7Hr1G075790.2 , HORVU7Hr1G075790.5 , HORVU7Hr1G075790.4 , HORVU7Hr1G075790.7 , HORVU7Hr1G075790.6 , HORVU7Hr1G075790.9 , HORVU7Hr1G075790.8 , HORVU7Hr1G075790.20 , HORVU7Hr1G075790.21 , HORVU7Hr1G075790.22 , HORVU7Hr1G075790.15 , HORVU7Hr1G075790.14 , HORVU7Hr1G075790.17 , HORVU7Hr1G075790.16 , HORVU7Hr1G075790.11 , HORVU7Hr1G075790.13 , HORVU7Hr1G075790.12 , HORVU7Hr1G075790.19 , HORVU7Hr1G075790.10 , HORVU7Hr1G075790.18 , HORVU7Hr1G075770.3 , HORVU7Hr1G075770.2 , HORVU7Hr1G075770.1
Wheat TraesCS7A02G317600 , TraesCS7A02G317600 , TraesCS7B02G219000 , TraesCS7D02G314300 , TraesCS7D02G314300 , TraesCS7B02G219000
Populus -


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cDNA sequences
Sobic.007G017400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G156101 - -
2 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
3 Sobic.002G337300 expressed protein -
4 Sobic.004G134500 expressed protein -
5 Sobic.003G267900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
6 Sobic.001G017900 FAD binding protein, putative, expressed -
7 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
8 Sobic.003G408800 DEK C terminal domain containing protein, expressed K17046: protein DEK
9 Sobic.007G159800 DNA binding protein, putative, expressed -
10 Sobic.008G163700 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
11 Sobic.003G052700 -(PubMedID : 23108465)@alliin lyase precursor, putative, expressed K16903: L-tryptophan---pyruvate aminotransferase
12 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
13 Sobic.009G114600 OsSigP6 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
14 Sobic.002G285300 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed -
15 Sobic.001G056300 BHLH transcription factor, putative, expressed -
16 Sobic.003G060400 transcription regulator, putative, expressed -
17 Sobic.010G153532 - -
18 Sobic.002G297800 growth regulating factor protein, putative, expressed -
19 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
20 Sobic.001G361900 ATPase, putative, expressed K08900: mitochondrial chaperone BCS1


Gene co-expression network
sample Sobic007G017400 Sobic007G017400 Sobic007G156101 Sobic007G156101 Sobic007G017400--Sobic007G156101 Sobic001G237700 Sobic001G237700 Sobic007G017400--Sobic001G237700 Sobic002G337300 Sobic002G337300 Sobic007G017400--Sobic002G337300 Sobic004G134500 Sobic004G134500 Sobic007G017400--Sobic004G134500 Sobic003G267900 Sobic003G267900 Sobic007G017400--Sobic003G267900 Sobic001G017900 Sobic001G017900 Sobic007G017400--Sobic001G017900 Sobic001G423700 Sobic001G423700 Sobic007G017400--Sobic001G423700 Sobic003G408800 Sobic003G408800 Sobic007G017400--Sobic003G408800 Sobic007G159800 Sobic007G159800 Sobic007G017400--Sobic007G159800 Sobic007G156101--Sobic003G267900 Sobic007G156101--Sobic001G017900 Sobic007G156101--Sobic007G017400 Sobic002G285300 Sobic002G285300 Sobic007G156101--Sobic002G285300 Sobic006G192400 Sobic006G192400 Sobic007G156101--Sobic006G192400 Sobic008G163700 Sobic008G163700 Sobic007G156101--Sobic008G163700 Sobic007G156101--Sobic007G159800 Sobic004G284400 Sobic004G284400 Sobic007G156101--Sobic004G284400 Sobic007G156101--Sobic002G337300 Sobic001G237700--Sobic001G423700 Sobic001G237700--Sobic007G017400 Sobic005G195800 Sobic005G195800 Sobic001G237700--Sobic005G195800 Sobic007G050400 Sobic007G050400 Sobic001G237700--Sobic007G050400 Sobic002G425800 Sobic002G425800 Sobic001G237700--Sobic002G425800 Sobic004G327400 Sobic004G327400 Sobic001G237700--Sobic004G327400 Sobic001G237700--Sobic002G337300 Sobic004G354700 Sobic004G354700 Sobic001G237700--Sobic004G354700 Sobic002G166500 Sobic002G166500 Sobic001G237700--Sobic002G166500 Sobic002G337300--Sobic001G423700 Sobic002G337300--Sobic007G017400 Sobic002G337300--Sobic007G050400 Sobic002G337300--Sobic001G237700 Sobic002G337300--Sobic003G408800 Sobic002G297800 Sobic002G297800 Sobic002G337300--Sobic002G297800 Sobic002G337300--Sobic007G156101 Sobic003G176900 Sobic003G176900 Sobic002G337300--Sobic003G176900 Sobic006G204200 Sobic006G204200 Sobic002G337300--Sobic006G204200 Sobic004G134500--Sobic007G017400 Sobic003G037900 Sobic003G037900 Sobic004G134500--Sobic003G037900 Sobic001G199900 Sobic001G199900 Sobic004G134500--Sobic001G199900 Sobic004G134500--Sobic007G050400 Sobic007G106400 Sobic007G106400 Sobic004G134500--Sobic007G106400 Sobic002G293900 Sobic002G293900 Sobic004G134500--Sobic002G293900 Sobic004G134500--Sobic001G237700 Sobic004G134500--Sobic002G337300 Sobic007G222800 Sobic007G222800 Sobic004G134500--Sobic007G222800 Sobic003G267900--Sobic007G156101 Sobic003G267900--Sobic002G285300 Sobic003G267900--Sobic001G017900 Sobic003G267900--Sobic006G192400 Sobic003G267900--Sobic004G284400 Sobic003G267900--Sobic007G017400 Sobic010G036000 Sobic010G036000 Sobic003G267900--Sobic010G036000 Sobic003G267900--Sobic008G163700 Sobic003G397000 Sobic003G397000 Sobic003G267900--Sobic003G397000 Sobic001G017900--Sobic006G192400 Sobic001G017900--Sobic002G285300 Sobic001G017900--Sobic008G163700 Sobic001G017900--Sobic007G156101 Sobic001G017900--Sobic003G267900 Sobic006G157300 Sobic006G157300 Sobic001G017900--Sobic006G157300 Sobic001G017900--Sobic004G284400 Sobic009G255300 Sobic009G255300 Sobic001G017900--Sobic009G255300 Sobic001G017900--Sobic010G036000 Sobic006G080300 Sobic006G080300 Sobic001G423700--Sobic006G080300 Sobic001G423700--Sobic001G237700 Sobic001G423700--Sobic005G195800 Sobic001G423700--Sobic002G337300 Sobic001G206100 Sobic001G206100 Sobic001G423700--Sobic001G206100 Sobic004G213000 Sobic004G213000 Sobic001G423700--Sobic004G213000 Sobic001G423700--Sobic002G166500 Sobic002G161000 Sobic002G161000 Sobic001G423700--Sobic002G161000 Sobic001G257300 Sobic001G257300 Sobic001G423700--Sobic001G257300 Sobic003G408800--Sobic001G423700 Sobic003G408800--Sobic002G337300 Sobic003G408800--Sobic007G017400 Sobic003G408800--Sobic002G297800 Sobic003G408800--Sobic002G425800 Sobic009G213300 Sobic009G213300 Sobic003G408800--Sobic009G213300 Sobic003G408800--Sobic001G237700 Sobic001G056300 Sobic001G056300 Sobic003G408800--Sobic001G056300 Sobic002G049000 Sobic002G049000 Sobic003G408800--Sobic002G049000 Sobic001G038500 Sobic001G038500 Sobic007G159800--Sobic001G038500 Sobic002G376800 Sobic002G376800 Sobic007G159800--Sobic002G376800 Sobic003G057800 Sobic003G057800 Sobic007G159800--Sobic003G057800 Sobic009G230400 Sobic009G230400 Sobic007G159800--Sobic009G230400 Sobic007G159800--Sobic006G204200 Sobic008G105500 Sobic008G105500 Sobic007G159800--Sobic008G105500 Sobic007G159800--Sobic001G056300 Sobic007G159800--Sobic008G163700 Sobic010G092100 Sobic010G092100 Sobic007G159800--Sobic010G092100
Octagon: transcription factors


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