Gene annotation
| Transcriptome id | Sobic.003G052700.1 |
|---|---|
| Synonym | Vanishing Tassel2, TAR2, vt2, Sb03g004570 |
| Functional annotation | - (PubMedID : 23108465) alliin lyase precursor, putative, expressed |
| UniProt | A0A1B6Q1G1 , I2AW76 |
| Pfam | PF04864 |
| Panther DB | PTHR11751 PTHR11751:SF434 |
| NCBI CDD | KOG0257; Kynurenine aminotransferase, glutamine transaminase K |
| KEGG Orthology | K16903; L-tryptophan---pyruvate aminotransferase |
| Gene Ontology | GO:0016846; carbon-sulfur lyase activity |
Orthologs (automatic annotation)
| TAIR | AT4G24670 : tryptophan aminotransferase related 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g07500.1 : alliin lyase precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a023267 , Zm00025a035713 |
| Brachypodium | KQK02887 |
| Barley | HORVU3Hr1G016490.15 , HORVU3Hr1G016490.14 , HORVU3Hr1G016490.17 , HORVU3Hr1G016490.16 , HORVU3Hr1G016490.11 , HORVU3Hr1G016490.10 , HORVU3Hr1G016490.13 , HORVU3Hr1G016490.12 , HORVU3Hr1G016490.18 , HORVU1Hr1G072230.1 , HORVU1Hr1G072230.3 , HORVU1Hr1G072230.2 , HORVU1Hr1G025020.5 , HORVU1Hr1G025020.1 , HORVU3Hr1G016490.1 , HORVU3Hr1G016490.3 , HORVU3Hr1G016490.2 , HORVU3Hr1G016490.5 , HORVU3Hr1G016490.4 , HORVU3Hr1G016490.7 , HORVU3Hr1G016490.6 , HORVU3Hr1G016490.8 |
| Wheat | TraesCS3D02G093300 , TraesCS1B02G249600 , TraesCS1A02G113600 , TraesCS3A02G093000 , TraesCS1B02G133900 , TraesCS1A02G233800 , TraesCS3B02G108200 , TraesCS1D02G238100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G017400 | APOBEC1 complementation factor, putative, expressed | K13161: heterogeneous nuclear ribonucleoprotein R |
| 2 | Sobic.003G023800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide-N4-asparagine amidase A, putative, expressed | - |
| 3 | Sobic.003G217632 | - | - |
| 4 | Sobic.010G092100 | PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed | - |
| 5 | Sobic.007G156101 | - | - |
| 6 | Sobic.002G306300 | nucleobase-ascorbate transporter, putative, expressed | K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1 |
| 7 | Sobic.008G147101 | - | - |
| 8 | Sobic.002G330800 | BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed | - |
| 9 | Sobic.001G361900 | ATPase, putative, expressed | K08900: mitochondrial chaperone BCS1 |
| 10 | Sobic.002G285300 | "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed | - |
| 11 | Sobic.004G354700 | PCF-like (ClassI) Subclade 1 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 12 | Sobic.001G019400 | protein kinase family protein, putative, expressed | - |
| 13 | Sobic.004G134500 | expressed protein | - |
| 14 | Sobic.007G159800 | DNA binding protein, putative, expressed | - |
| 15 | Sobic.003G030600 | "Cytochrome P450 family protein, involved in brassinosteroids biosynthesis"(PubMedID : 26333774)@"D2(Ortholog in rice:Hong et al., 2003)"(PubMedID : 31659866)@cytochrome P450, putative, expressed | K09589: CYP90D2, steroid 3-oxidase |
| 16 | Sobic.003G359800 | MYB family transcription factor, putative, expressed | - |
| 17 | Sobic.009G237800 | expressed protein | - |
| 18 | Sobic.002G426900 | DNAJ heat shock N-terminal domain-containing protein, putative, expressed | - |
| 19 | Sobic.004G284400 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed | - |
| 20 | Sobic.001G038500 | ANT1, putative, expressed | K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter) |
Gene co-expression network
Octagon: transcription factors
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