Gene annotation
| Transcriptome id | Sobic.004G354700.1 |
|---|---|
| Synonym | TCP-like gene;TCP-like gene;SbTCP13;SbTCP13, Sb04g038140 |
| Functional annotation | PCF-like (ClassI) Subclade 1 TCP (PubMedID : 21444336) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) "TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941) "plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054) TCP family transcription factor, putative, expressed |
| UniProt | C5XWP0 |
| Pfam | PF03634 |
| Panther DB | PTHR31072 PTHR31072:SF7 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G23280 : TCP family transcription factor |
|---|---|
| RAP-DB (Rice) | LOC_Os12g07480.1 : TCP family transcription factor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a005363 , Zm00025a026225 , Zm00025a032088 , Zm00025a022662 |
| Brachypodium | KQJ81756 , PNT69714 |
| Barley | HORVU5Hr1G035980.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G125500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 2 | Sobic.001G237700 | RNA recognition motif containing protein, putative, expressed | K13091: RBM39, RNA-binding protein 39 |
| 3 | Sobic.008G163700 | helix-loop-helix DNA-binding domain containing protein, expressed | K16189: phytochrome-interacting factor 4 |
| 4 | Sobic.007G204400 | expressed protein | - |
| 5 | Sobic.002G285300 | "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed | - |
| 6 | Sobic.001G017900 | FAD binding protein, putative, expressed | - |
| 7 | Sobic.007G017400 | APOBEC1 complementation factor, putative, expressed | K13161: heterogeneous nuclear ribonucleoprotein R |
| 8 | Sobic.010G036000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 9 | Sobic.002G337300 | expressed protein | - |
| 10 | Sobic.009G255300 | OsClp8 - Putative Clp protease homologue, expressed | K01358: clpP, ATP-dependent Clp protease, protease subunit |
| 11 | Sobic.003G264700 | expressed protein | - |
| 12 | Sobic.007G156101 | - | - |
| 13 | Sobic.001G361900 | ATPase, putative, expressed | K08900: mitochondrial chaperone BCS1 |
| 14 | Sobic.004G284400 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed | - |
| 15 | Sobic.003G052700 | -(PubMedID : 23108465)@alliin lyase precursor, putative, expressed | K16903: L-tryptophan---pyruvate aminotransferase |
| 16 | Sobic.009G237800 | expressed protein | - |
| 17 | Sobic.003G359800 | MYB family transcription factor, putative, expressed | - |
| 18 | Sobic.004G072000 | ribosome, putative, expressed | - |
| 19 | Sobic.003G179100 | protein binding protein, putative, expressed | K12821: PRPF40, pre-mRNA-processing factor 40 |
| 20 | Sobic.007G050400 | - | K12811: DDX46, ATP-dependent RNA helicase DDX46/PRP5 |
Gene co-expression network
Octagon: transcription factors
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