Gene annotation
Transcriptome id Sobic.009G114600.2,Sobic.009G114600.1,Sobic.009G114600.3
Synonym PLSP1, Sb09g018210
Functional annotation OsSigP6 - Putative Type I Signal Peptidase homologue
employs a putative Ser/Lys catalytic dyad, expressed
UniProt C5YWW9 , A0A1B6P8G9 , A0A1B6P7U7
Pfam PF10502 PF00717
Panther DB PTHR12383 PTHR12383:SF18
NCBI CDD -
KEGG Orthology K03100; signal peptidase I
Gene Ontology GO:0016020; membrane GO:0008236serine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT3G24590 : plastidic type i signal peptidase 1
RAP-DB (Rice) LOC_Os09g28000.1 : OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed
MaizeGDB (Corn) Zm00025a057507
Brachypodium KQJ85524
Barley HORVU7Hr1G109250.16 , HORVU7Hr1G109250.17 , HORVU7Hr1G109250.14 , HORVU7Hr1G109250.15 , HORVU7Hr1G109250.10 , HORVU7Hr1G109250.11 , HORVU7Hr1G109250.4 , HORVU7Hr1G109250.6 , HORVU7Hr1G109250.7 , HORVU7Hr1G109250.1 , HORVU7Hr1G109250.2 , HORVU7Hr1G109250.3 , HORVU7Hr1G109250.8 , HORVU7Hr1G109250.9 , HORVU7Hr1G109250.29 , HORVU7Hr1G109250.26 , HORVU7Hr1G109250.25 , HORVU7Hr1G109250.24 , HORVU7Hr1G109250.23 , HORVU7Hr1G109250.22 , HORVU7Hr1G109250.20
Wheat TraesCS2B02G617500 , TraesCS2B02G617500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G074200 abhydrolase domain-containing protein FAM108C1, putative, expressed -
2 Sobic.010G153532 - -
3 Sobic.003G060400 transcription regulator, putative, expressed -
4 Sobic.010G242300 TKL_IRAK_DUF26-lh.6 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.003G144400 homeobox protein knotted-1-like 6, putative, expressed -
6 Sobic.002G103500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
7 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R
8 Sobic.001G056300 BHLH transcription factor, putative, expressed -
9 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
10 Sobic.006G073150 - -
11 Sobic.009G045700 E3 ubiquitin-protein ligase SINA-like, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
12 Sobic.007G035600 MSP domain containing protein, putative, expressed -
13 Sobic.001G469400 expressed protein -
14 Sobic.004G110300 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.006G004000 - -
16 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
17 Sobic.003G115700 lipase, putative, expressed -
18 Sobic.008G153600 WRKY94, expressed -
19 Sobic.010G077600 gb protein, putative, expressed -
20 Sobic.005G028400 "Ca ATPase, IIB type"(PubMedID : 22196357)@Autoihibited Ca2+ - ATPase 11(PubMedID : 26320239)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C


Gene co-expression network
sample Sobic009G114600 Sobic009G114600 Sobic004G074200 Sobic004G074200 Sobic009G114600--Sobic004G074200 Sobic010G153532 Sobic010G153532 Sobic009G114600--Sobic010G153532 Sobic003G060400 Sobic003G060400 Sobic009G114600--Sobic003G060400 Sobic010G242300 Sobic010G242300 Sobic009G114600--Sobic010G242300 Sobic003G144400 Sobic003G144400 Sobic009G114600--Sobic003G144400 Sobic002G103500 Sobic002G103500 Sobic009G114600--Sobic002G103500 Sobic007G017400 Sobic007G017400 Sobic009G114600--Sobic007G017400 Sobic001G056300 Sobic001G056300 Sobic009G114600--Sobic001G056300 Sobic006G204200 Sobic006G204200 Sobic009G114600--Sobic006G204200 Sobic004G074200--Sobic009G114600 Sobic004G074200--Sobic010G153532 Sobic003G221300 Sobic003G221300 Sobic004G074200--Sobic003G221300 Sobic005G097700 Sobic005G097700 Sobic004G074200--Sobic005G097700 Sobic002G034400 Sobic002G034400 Sobic004G074200--Sobic002G034400 Sobic007G085350 Sobic007G085350 Sobic004G074200--Sobic007G085350 Sobic002G175550 Sobic002G175550 Sobic004G074200--Sobic002G175550 Sobic002G416200 Sobic002G416200 Sobic004G074200--Sobic002G416200 Sobic003G219400 Sobic003G219400 Sobic004G074200--Sobic003G219400 Sobic010G153532--Sobic004G074200 Sobic010G153532--Sobic009G114600 Sobic010G153532--Sobic002G175550 Sobic006G004000 Sobic006G004000 Sobic010G153532--Sobic006G004000 Sobic010G153532--Sobic005G097700 Sobic010G153532--Sobic003G219400 Sobic006G073150 Sobic006G073150 Sobic010G153532--Sobic006G073150 Sobic001G451200 Sobic001G451200 Sobic010G153532--Sobic001G451200 Sobic010G153532--Sobic003G221300 Sobic003G060400--Sobic006G204200 Sobic001G046600 Sobic001G046600 Sobic003G060400--Sobic001G046600 Sobic009G045700 Sobic009G045700 Sobic003G060400--Sobic009G045700 Sobic007G073400 Sobic007G073400 Sobic003G060400--Sobic007G073400 Sobic002G297800 Sobic002G297800 Sobic003G060400--Sobic002G297800 Sobic004G212800 Sobic004G212800 Sobic003G060400--Sobic004G212800 Sobic003G060400--Sobic009G114600 Sobic003G057800 Sobic003G057800 Sobic003G060400--Sobic003G057800 Sobic004G164600 Sobic004G164600 Sobic003G060400--Sobic004G164600 Sobic009G107500 Sobic009G107500 Sobic010G242300--Sobic009G107500 Sobic007G035600 Sobic007G035600 Sobic010G242300--Sobic007G035600 Sobic005G096300 Sobic005G096300 Sobic010G242300--Sobic005G096300 Sobic009G198900 Sobic009G198900 Sobic010G242300--Sobic009G198900 Sobic004G195700 Sobic004G195700 Sobic010G242300--Sobic004G195700 Sobic005G012000 Sobic005G012000 Sobic010G242300--Sobic005G012000 Sobic005G222700 Sobic005G222700 Sobic010G242300--Sobic005G222700 Sobic004G020401 Sobic004G020401 Sobic010G242300--Sobic004G020401 Sobic010G242300--Sobic007G073400 Sobic008G153600 Sobic008G153600 Sobic003G144400--Sobic008G153600 Sobic003G144400--Sobic009G045700 Sobic001G469400 Sobic001G469400 Sobic003G144400--Sobic001G469400 Sobic001G274700 Sobic001G274700 Sobic003G144400--Sobic001G274700 Sobic009G214600 Sobic009G214600 Sobic003G144400--Sobic009G214600 Sobic006G038400 Sobic006G038400 Sobic003G144400--Sobic006G038400 Sobic003G144400--Sobic006G204200 Sobic007G094801 Sobic007G094801 Sobic003G144400--Sobic007G094801 Sobic003G144400--Sobic009G114600 Sobic003G363500 Sobic003G363500 Sobic002G103500--Sobic003G363500 Sobic010G056200 Sobic010G056200 Sobic002G103500--Sobic010G056200 Sobic002G103500--Sobic003G144400 Sobic002G380400 Sobic002G380400 Sobic002G103500--Sobic002G380400 Sobic002G103500--Sobic009G114600 Sobic004G113800 Sobic004G113800 Sobic002G103500--Sobic004G113800 Sobic007G190333 Sobic007G190333 Sobic002G103500--Sobic007G190333 Sobic001G107500 Sobic001G107500 Sobic002G103500--Sobic001G107500 Sobic009G034200 Sobic009G034200 Sobic002G103500--Sobic009G034200 Sobic007G156101 Sobic007G156101 Sobic007G017400--Sobic007G156101 Sobic001G237700 Sobic001G237700 Sobic007G017400--Sobic001G237700 Sobic002G337300 Sobic002G337300 Sobic007G017400--Sobic002G337300 Sobic004G134500 Sobic004G134500 Sobic007G017400--Sobic004G134500 Sobic003G267900 Sobic003G267900 Sobic007G017400--Sobic003G267900 Sobic001G017900 Sobic001G017900 Sobic007G017400--Sobic001G017900 Sobic001G423700 Sobic001G423700 Sobic007G017400--Sobic001G423700 Sobic003G408800 Sobic003G408800 Sobic007G017400--Sobic003G408800 Sobic007G159800 Sobic007G159800 Sobic007G017400--Sobic007G159800 Sobic001G056300--Sobic007G073400 Sobic009G113600 Sobic009G113600 Sobic001G056300--Sobic009G113600 Sobic008G009500 Sobic008G009500 Sobic001G056300--Sobic008G009500 Sobic002G062300 Sobic002G062300 Sobic001G056300--Sobic002G062300 SobicK024000 SobicK024000 Sobic001G056300--SobicK024000 Sobic007G099500 Sobic007G099500 Sobic001G056300--Sobic007G099500 Sobic002G376800 Sobic002G376800 Sobic001G056300--Sobic002G376800 Sobic001G056300--Sobic004G164600 Sobic003G044900 Sobic003G044900 Sobic001G056300--Sobic003G044900 Sobic006G204200--Sobic002G376800 Sobic006G204200--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic006G204200--Sobic001G479500 Sobic004G016500 Sobic004G016500 Sobic006G204200--Sobic004G016500 Sobic004G315800 Sobic004G315800 Sobic006G204200--Sobic004G315800 Sobic002G330400 Sobic002G330400 Sobic006G204200--Sobic002G330400 Sobic008G161401 Sobic008G161401 Sobic006G204200--Sobic008G161401 Sobic006G204200--Sobic004G020401 Sobic010G248200 Sobic010G248200 Sobic006G204200--Sobic010G248200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.