Gene annotation
Transcriptome id Sobic.002G103500.1
Synonym RAB11c, ATRAB-A2A, ATRAB11C, ATRABA2A, RAB-A2A, Sb02g008790
Functional annotation ras-related protein, putative, expressed
UniProt C5X3H5
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF564
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G09630 : RAB GTPase 11C
RAP-DB (Rice) LOC_Os03g62600.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a008978 , Zm00025a013628
Brachypodium KQK18040
Barley HORVU7Hr1G089120.1 , HORVU7Hr1G089120.2 , HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4
Wheat TraesCS7B02G273300 , TraesCS7D02G368300 , TraesCS4A02G343500 , TraesCS5D02G529500 , TraesCS7A02G354400 , TraesCS5B02G530800
Populus -


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cDNA sequences
Sobic.002G103500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G363500 dual specificity protein phosphatase, putative, expressed -
2 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
3 Sobic.003G144400 homeobox protein knotted-1-like 6, putative, expressed -
4 Sobic.002G380400 heavy metal-associated domain containing protein, expressed -
5 Sobic.009G114600 OsSigP6 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
6 Sobic.004G113800 CAPIP1, putative, expressed K14496: abscisic acid receptor PYR/PYL family
7 Sobic.007G190333 - -
8 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
9 Sobic.009G034200 CBL-interacting protein kinase 1(PubMedID : 26320239)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
10 Sobic.001G159400 protein kinase domain containing protein, expressed -
11 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
12 Sobic.002G371500 RNA recognition motif containing protein, putative, expressed -
13 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
14 Sobic.007G104800 expressed protein -
15 Sobic.004G030100 glycosyltransferase, putative, expressed -
16 Sobic.001G253700 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
17 Sobic.003G001000 - -
18 Sobic.009G114800 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
19 Sobic.003G345400 NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
20 Sobic.006G228500 coiled-coil domain-containing protein, putative, expressed K13115: coiled-coil domain-containing protein 130


Gene co-expression network
sample Sobic002G103500 Sobic002G103500 Sobic003G363500 Sobic003G363500 Sobic002G103500--Sobic003G363500 Sobic010G056200 Sobic010G056200 Sobic002G103500--Sobic010G056200 Sobic003G144400 Sobic003G144400 Sobic002G103500--Sobic003G144400 Sobic002G380400 Sobic002G380400 Sobic002G103500--Sobic002G380400 Sobic009G114600 Sobic009G114600 Sobic002G103500--Sobic009G114600 Sobic004G113800 Sobic004G113800 Sobic002G103500--Sobic004G113800 Sobic007G190333 Sobic007G190333 Sobic002G103500--Sobic007G190333 Sobic001G107500 Sobic001G107500 Sobic002G103500--Sobic001G107500 Sobic009G034200 Sobic009G034200 Sobic002G103500--Sobic009G034200 Sobic003G071500 Sobic003G071500 Sobic003G363500--Sobic003G071500 Sobic003G363500--Sobic002G103500 Sobic004G066200 Sobic004G066200 Sobic003G363500--Sobic004G066200 Sobic002G371500 Sobic002G371500 Sobic003G363500--Sobic002G371500 Sobic010G151900 Sobic010G151900 Sobic003G363500--Sobic010G151900 Sobic007G104800 Sobic007G104800 Sobic003G363500--Sobic007G104800 Sobic001G241100 Sobic001G241100 Sobic003G363500--Sobic001G241100 Sobic007G078600 Sobic007G078600 Sobic003G363500--Sobic007G078600 Sobic006G200600 Sobic006G200600 Sobic003G363500--Sobic006G200600 Sobic010G056200--Sobic001G107500 Sobic010G056200--Sobic004G113800 Sobic004G083700 Sobic004G083700 Sobic010G056200--Sobic004G083700 Sobic007G052900 Sobic007G052900 Sobic010G056200--Sobic007G052900 Sobic003G324000 Sobic003G324000 Sobic010G056200--Sobic003G324000 Sobic009G065100 Sobic009G065100 Sobic010G056200--Sobic009G065100 Sobic006G228500 Sobic006G228500 Sobic010G056200--Sobic006G228500 Sobic002G309800 Sobic002G309800 Sobic010G056200--Sobic002G309800 Sobic009G157200 Sobic009G157200 Sobic010G056200--Sobic009G157200 Sobic008G153600 Sobic008G153600 Sobic003G144400--Sobic008G153600 Sobic009G045700 Sobic009G045700 Sobic003G144400--Sobic009G045700 Sobic001G469400 Sobic001G469400 Sobic003G144400--Sobic001G469400 Sobic001G274700 Sobic001G274700 Sobic003G144400--Sobic001G274700 Sobic009G214600 Sobic009G214600 Sobic003G144400--Sobic009G214600 Sobic006G038400 Sobic006G038400 Sobic003G144400--Sobic006G038400 Sobic006G204200 Sobic006G204200 Sobic003G144400--Sobic006G204200 Sobic007G094801 Sobic007G094801 Sobic003G144400--Sobic007G094801 Sobic003G144400--Sobic009G114600 Sobic005G036700 Sobic005G036700 Sobic002G380400--Sobic005G036700 Sobic001G078900 Sobic001G078900 Sobic002G380400--Sobic001G078900 Sobic010G245100 Sobic010G245100 Sobic002G380400--Sobic010G245100 Sobic009G213400 Sobic009G213400 Sobic002G380400--Sobic009G213400 Sobic002G380400--Sobic002G103500 Sobic003G320600 Sobic003G320600 Sobic002G380400--Sobic003G320600 Sobic003G178700 Sobic003G178700 Sobic002G380400--Sobic003G178700 Sobic003G222300 Sobic003G222300 Sobic002G380400--Sobic003G222300 Sobic001G465100 Sobic001G465100 Sobic002G380400--Sobic001G465100 Sobic004G074200 Sobic004G074200 Sobic009G114600--Sobic004G074200 Sobic010G153532 Sobic010G153532 Sobic009G114600--Sobic010G153532 Sobic003G060400 Sobic003G060400 Sobic009G114600--Sobic003G060400 Sobic010G242300 Sobic010G242300 Sobic009G114600--Sobic010G242300 Sobic009G114600--Sobic003G144400 Sobic009G114600--Sobic002G103500 Sobic007G017400 Sobic007G017400 Sobic009G114600--Sobic007G017400 Sobic001G056300 Sobic001G056300 Sobic009G114600--Sobic001G056300 Sobic009G114600--Sobic006G204200 Sobic004G113800--Sobic010G056200 Sobic004G113800--Sobic007G052900 Sobic009G140500 Sobic009G140500 Sobic004G113800--Sobic009G140500 Sobic001G368400 Sobic001G368400 Sobic004G113800--Sobic001G368400 Sobic001G118100 Sobic001G118100 Sobic004G113800--Sobic001G118100 Sobic004G113800--Sobic009G034200 Sobic004G241500 Sobic004G241500 Sobic004G113800--Sobic004G241500 Sobic004G174400 Sobic004G174400 Sobic004G113800--Sobic004G174400 Sobic004G113800--Sobic003G324000 Sobic003G001000 Sobic003G001000 Sobic007G190333--Sobic003G001000 Sobic001G253700 Sobic001G253700 Sobic007G190333--Sobic001G253700 Sobic003G113200 Sobic003G113200 Sobic007G190333--Sobic003G113200 Sobic007G190333--Sobic010G056200 Sobic003G176600 Sobic003G176600 Sobic007G190333--Sobic003G176600 Sobic001G048766 Sobic001G048766 Sobic007G190333--Sobic001G048766 Sobic001G292200 Sobic001G292200 Sobic007G190333--Sobic001G292200 Sobic001G159400 Sobic001G159400 Sobic007G190333--Sobic001G159400 Sobic004G153400 Sobic004G153400 Sobic007G190333--Sobic004G153400 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic002G157000 Sobic002G157000 Sobic001G107500--Sobic002G157000 Sobic001G107500--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic001G107500--Sobic001G090400 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic003G345400 Sobic003G345400 Sobic009G034200--Sobic003G345400 Sobic007G113800 Sobic007G113800 Sobic009G034200--Sobic007G113800 Sobic009G034200--Sobic009G140500 Sobic009G034200--Sobic006G228500 Sobic003G179201 Sobic003G179201 Sobic009G034200--Sobic003G179201 Sobic002G399100 Sobic002G399100 Sobic009G034200--Sobic002G399100 Sobic009G034200--Sobic010G056200 Sobic001G067850 Sobic001G067850 Sobic009G034200--Sobic001G067850 Sobic009G034200--Sobic004G113800
Octagon: transcription factors


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