Gene annotation
Transcriptome id Sobic.002G371500.1
Synonym Sb02g039025
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6QFH6
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G46020 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g31810.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048727
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G363500 dual specificity protein phosphatase, putative, expressed -
2 Sobic.005G029100 PP2A regulatory subunit TAP46, putative, expressed -
3 Sobic.003G223200 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
4 Sobic.002G103500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
5 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
6 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
7 Sobic.003G395100 tetratricopeptide repeat protein 1, putative, expressed -
8 Sobic.003G369900 expressed protein -
9 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
10 Sobic.010G151900 ribonuclease P family protein, putative, expressed K03538: POP4, ribonuclease P protein subunit POP4
11 Sobic.010G088000 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
12 Sobic.003G071500 geranylgeranyl transferase type-1 subunit beta, putative, expressed K11713: geranylgeranyl transferase type-1 subunit beta
13 Sobic.010G030700 hydrolase, NUDIX family protein, expressed K03426: E3.6.1.22, NUDT12, NAD+ diphosphatase
14 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
15 Sobic.002G116900 expressed protein -
16 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
17 Sobic.006G253000 expressed protein -
18 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
19 Sobic.002G352600 expressed protein -
20 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1


Gene co-expression network
sample Sobic002G371500 Sobic002G371500 Sobic003G363500 Sobic003G363500 Sobic002G371500--Sobic003G363500 Sobic005G029100 Sobic005G029100 Sobic002G371500--Sobic005G029100 Sobic003G223200 Sobic003G223200 Sobic002G371500--Sobic003G223200 Sobic002G103500 Sobic002G103500 Sobic002G371500--Sobic002G103500 Sobic009G165800 Sobic009G165800 Sobic002G371500--Sobic009G165800 Sobic009G207000 Sobic009G207000 Sobic002G371500--Sobic009G207000 Sobic003G395100 Sobic003G395100 Sobic002G371500--Sobic003G395100 Sobic003G369900 Sobic003G369900 Sobic002G371500--Sobic003G369900 Sobic001G047400 Sobic001G047400 Sobic002G371500--Sobic001G047400 Sobic003G071500 Sobic003G071500 Sobic003G363500--Sobic003G071500 Sobic003G363500--Sobic002G103500 Sobic004G066200 Sobic004G066200 Sobic003G363500--Sobic004G066200 Sobic003G363500--Sobic002G371500 Sobic010G151900 Sobic010G151900 Sobic003G363500--Sobic010G151900 Sobic007G104800 Sobic007G104800 Sobic003G363500--Sobic007G104800 Sobic001G241100 Sobic001G241100 Sobic003G363500--Sobic001G241100 Sobic007G078600 Sobic007G078600 Sobic003G363500--Sobic007G078600 Sobic006G200600 Sobic006G200600 Sobic003G363500--Sobic006G200600 Sobic005G029100--Sobic001G241100 Sobic001G079200 Sobic001G079200 Sobic005G029100--Sobic001G079200 Sobic003G273600 Sobic003G273600 Sobic005G029100--Sobic003G273600 Sobic003G169600 Sobic003G169600 Sobic005G029100--Sobic003G169600 Sobic004G119100 Sobic004G119100 Sobic005G029100--Sobic004G119100 Sobic003G344900 Sobic003G344900 Sobic005G029100--Sobic003G344900 Sobic002G166300 Sobic002G166300 Sobic005G029100--Sobic002G166300 Sobic002G113900 Sobic002G113900 Sobic005G029100--Sobic002G113900 Sobic006G092400 Sobic006G092400 Sobic005G029100--Sobic006G092400 Sobic003G223200--Sobic002G371500 Sobic003G223200--Sobic003G363500 Sobic001G017800 Sobic001G017800 Sobic003G223200--Sobic001G017800 Sobic001G237700 Sobic001G237700 Sobic003G223200--Sobic001G237700 Sobic001G423700 Sobic001G423700 Sobic003G223200--Sobic001G423700 Sobic001G449400 Sobic001G449400 Sobic003G223200--Sobic001G449400 Sobic004G351600 Sobic004G351600 Sobic003G223200--Sobic004G351600 Sobic003G223200--Sobic010G151900 Sobic003G219400 Sobic003G219400 Sobic003G223200--Sobic003G219400 Sobic002G103500--Sobic003G363500 Sobic010G056200 Sobic010G056200 Sobic002G103500--Sobic010G056200 Sobic003G144400 Sobic003G144400 Sobic002G103500--Sobic003G144400 Sobic002G380400 Sobic002G380400 Sobic002G103500--Sobic002G380400 Sobic009G114600 Sobic009G114600 Sobic002G103500--Sobic009G114600 Sobic004G113800 Sobic004G113800 Sobic002G103500--Sobic004G113800 Sobic007G190333 Sobic007G190333 Sobic002G103500--Sobic007G190333 Sobic001G107500 Sobic001G107500 Sobic002G103500--Sobic001G107500 Sobic009G034200 Sobic009G034200 Sobic002G103500--Sobic009G034200 Sobic001G080700 Sobic001G080700 Sobic009G165800--Sobic001G080700 Sobic009G165800--Sobic001G047400 Sobic006G101700 Sobic006G101700 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic003G015900 Sobic003G015900 Sobic009G165800--Sobic003G015900 Sobic010G083700 Sobic010G083700 Sobic009G165800--Sobic010G083700 Sobic010G251000 Sobic010G251000 Sobic009G165800--Sobic010G251000 Sobic004G121100 Sobic004G121100 Sobic009G165800--Sobic004G121100 Sobic003G264200 Sobic003G264200 Sobic009G165800--Sobic003G264200 Sobic009G228700 Sobic009G228700 Sobic009G207000--Sobic009G228700 Sobic009G207000--Sobic004G066200 Sobic001G199100 Sobic001G199100 Sobic009G207000--Sobic001G199100 Sobic001G323000 Sobic001G323000 Sobic009G207000--Sobic001G323000 Sobic001G085100 Sobic001G085100 Sobic009G207000--Sobic001G085100 Sobic006G249700 Sobic006G249700 Sobic009G207000--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G207000--Sobic006G148200 Sobic010G000900 Sobic010G000900 Sobic009G207000--Sobic010G000900 Sobic003G012200 Sobic003G012200 Sobic009G207000--Sobic003G012200 Sobic004G020000 Sobic004G020000 Sobic003G395100--Sobic004G020000 Sobic003G002400 Sobic003G002400 Sobic003G395100--Sobic003G002400 Sobic004G058200 Sobic004G058200 Sobic003G395100--Sobic004G058200 Sobic001G358300 Sobic001G358300 Sobic003G395100--Sobic001G358300 Sobic010G188100 Sobic010G188100 Sobic003G395100--Sobic010G188100 Sobic002G293300 Sobic002G293300 Sobic003G395100--Sobic002G293300 Sobic006G163000 Sobic006G163000 Sobic003G395100--Sobic006G163000 Sobic001G103200 Sobic001G103200 Sobic003G395100--Sobic001G103200 Sobic002G166900 Sobic002G166900 Sobic003G395100--Sobic002G166900 Sobic008G046500 Sobic008G046500 Sobic003G369900--Sobic008G046500 Sobic001G031100 Sobic001G031100 Sobic003G369900--Sobic001G031100 Sobic007G187200 Sobic007G187200 Sobic003G369900--Sobic007G187200 Sobic009G068500 Sobic009G068500 Sobic003G369900--Sobic009G068500 Sobic005G160400 Sobic005G160400 Sobic003G369900--Sobic005G160400 Sobic002G294500 Sobic002G294500 Sobic003G369900--Sobic002G294500 Sobic010G068700 Sobic010G068700 Sobic003G369900--Sobic010G068700 Sobic009G205200 Sobic009G205200 Sobic003G369900--Sobic009G205200 Sobic010G240900 Sobic010G240900 Sobic003G369900--Sobic010G240900 Sobic002G116900 Sobic002G116900 Sobic001G047400--Sobic002G116900 Sobic001G047400--Sobic009G165800 Sobic001G047400--Sobic010G000900 Sobic001G047400--Sobic001G085100 Sobic001G047400--Sobic010G251000 Sobic001G047400--Sobic003G015900 Sobic001G051200 Sobic001G051200 Sobic001G047400--Sobic001G051200 Sobic001G261436 Sobic001G261436 Sobic001G047400--Sobic001G261436 Sobic001G047400--Sobic009G228700
Octagon: transcription factors


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