Gene annotation
Transcriptome id Sobic.003G071500.2
Synonym ATGGT-IB, GGB, Sb03g006060, PGGT-I
Functional annotation geranylgeranyl transferase type-1 subunit beta, putative, expressed
UniProt A0A1W0VW38
Pfam PF00432
Panther DB PTHR11774
NCBI CDD KOG0367; Protein geranylgeranyltransferase Type I, beta subunit
KEGG Orthology K11713; geranylgeranyl transferase type-1 subunit beta
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT2G39550 : Prenyltransferase family protein
RAP-DB (Rice) LOC_Os01g05680.1 : geranylgeranyl transferase type-1 subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a023457
Brachypodium KQK02727 , PNT69942 , PNT69943
Barley HORVU3Hr1G013720.4 , HORVU3Hr1G013720.5 , HORVU3Hr1G013720.6 , HORVU3Hr1G013720.1 , HORVU3Hr1G013720.2 , HORVU3Hr1G013720.3
Wheat TraesCS3A02G075000 , TraesCS3A02G075000 , TraesCS3B02G088900 , TraesCS3D02G074800 , TraesCS3D02G074800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
2 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
3 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
4 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
5 Sobic.004G007300 expressed protein -
6 Sobic.002G132300 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
7 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
8 Sobic.009G228700 expressed protein -
9 Sobic.001G522900 expressed protein -
10 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
11 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
12 Sobic.001G085500 NLI interacting factor-like phosphatase, putative, expressed -
13 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
14 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
15 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
16 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
17 Sobic.003G074400 expressed protein -
18 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
19 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
20 Sobic.002G200100 AGAP000554-PA, putative, expressed -


Gene co-expression network
sample Sobic003G071500 Sobic003G071500 Sobic002G378200 Sobic002G378200 Sobic003G071500--Sobic002G378200 Sobic004G066200 Sobic004G066200 Sobic003G071500--Sobic004G066200 Sobic009G259400 Sobic009G259400 Sobic003G071500--Sobic009G259400 Sobic002G010300 Sobic002G010300 Sobic003G071500--Sobic002G010300 Sobic004G007300 Sobic004G007300 Sobic003G071500--Sobic004G007300 Sobic002G132300 Sobic002G132300 Sobic003G071500--Sobic002G132300 Sobic001G356600 Sobic001G356600 Sobic003G071500--Sobic001G356600 Sobic009G228700 Sobic009G228700 Sobic003G071500--Sobic009G228700 Sobic001G522900 Sobic001G522900 Sobic003G071500--Sobic001G522900 Sobic006G278700 Sobic006G278700 Sobic002G378200--Sobic006G278700 Sobic004G345700 Sobic004G345700 Sobic002G378200--Sobic004G345700 Sobic002G084300 Sobic002G084300 Sobic002G378200--Sobic002G084300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic001G056200 Sobic001G056200 Sobic002G378200--Sobic001G056200 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic004G066200--Sobic001G356600 Sobic004G066200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic003G248200 Sobic003G248200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic004G121100 Sobic004G121100 Sobic009G259400--Sobic004G121100 Sobic002G395801 Sobic002G395801 Sobic009G259400--Sobic002G395801 Sobic003G012200 Sobic003G012200 Sobic009G259400--Sobic003G012200 Sobic009G217100 Sobic009G217100 Sobic009G259400--Sobic009G217100 Sobic003G063000 Sobic003G063000 Sobic009G259400--Sobic003G063000 Sobic010G251000 Sobic010G251000 Sobic009G259400--Sobic010G251000 Sobic006G200600 Sobic006G200600 Sobic009G259400--Sobic006G200600 Sobic001G281600 Sobic001G281600 Sobic009G259400--Sobic001G281600 Sobic008G179700 Sobic008G179700 Sobic009G259400--Sobic008G179700 Sobic007G026300 Sobic007G026300 Sobic002G010300--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic002G010300--Sobic001G090400 Sobic004G350100 Sobic004G350100 Sobic002G010300--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic002G010300--Sobic009G198100 Sobic004G021100 Sobic004G021100 Sobic002G010300--Sobic004G021100 Sobic003G081000 Sobic003G081000 Sobic002G010300--Sobic003G081000 Sobic006G173100 Sobic006G173100 Sobic002G010300--Sobic006G173100 Sobic002G010300--Sobic001G356600 Sobic002G200100 Sobic002G200100 Sobic002G010300--Sobic002G200100 Sobic002G197100 Sobic002G197100 Sobic004G007300--Sobic002G197100 Sobic001G408700 Sobic001G408700 Sobic004G007300--Sobic001G408700 Sobic004G007300--Sobic004G345700 Sobic006G092800 Sobic006G092800 Sobic004G007300--Sobic006G092800 Sobic004G007300--Sobic004G350100 Sobic004G007300--Sobic006G173100 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic004G007300--Sobic001G056200 Sobic002G132300--Sobic002G378200 Sobic009G054700 Sobic009G054700 Sobic002G132300--Sobic009G054700 Sobic002G132300--Sobic004G007300 Sobic002G132300--Sobic001G028400 Sobic002G132300--Sobic002G084300 Sobic004G263900 Sobic004G263900 Sobic002G132300--Sobic004G263900 Sobic001G512900 Sobic001G512900 Sobic002G132300--Sobic001G512900 Sobic008G174300 Sobic008G174300 Sobic002G132300--Sobic008G174300 Sobic010G033400 Sobic010G033400 Sobic002G132300--Sobic010G033400 Sobic001G356600--Sobic004G066200 Sobic001G356600--Sobic003G248200 Sobic002G034600 Sobic002G034600 Sobic001G356600--Sobic002G034600 Sobic001G512700 Sobic001G512700 Sobic001G356600--Sobic001G512700 Sobic001G356600--Sobic009G228700 Sobic009G179700 Sobic009G179700 Sobic001G356600--Sobic009G179700 Sobic010G018700 Sobic010G018700 Sobic001G356600--Sobic010G018700 Sobic001G356600--Sobic008G179700 Sobic004G274200 Sobic004G274200 Sobic001G356600--Sobic004G274200 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic009G228700--Sobic001G323000 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G228700--Sobic006G148200 Sobic003G312200 Sobic003G312200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic007G115900 Sobic007G115900 Sobic001G522900--Sobic007G115900 Sobic001G054200 Sobic001G054200 Sobic001G522900--Sobic001G054200 Sobic004G072800 Sobic004G072800 Sobic001G522900--Sobic004G072800 Sobic001G522900--Sobic002G378200 Sobic006G254600 Sobic006G254600 Sobic001G522900--Sobic006G254600 Sobic006G258900 Sobic006G258900 Sobic001G522900--Sobic006G258900 Sobic008G165000 Sobic008G165000 Sobic001G522900--Sobic008G165000 Sobic007G118000 Sobic007G118000 Sobic001G522900--Sobic007G118000 Sobic001G522900--Sobic003G071500
Octagon: transcription factors


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