Gene annotation
Transcriptome id Sobic.010G088000.1
Synonym Sb10g007620
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5Z6X3
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF436
NCBI CDD KOG4209; Splicing factor RNPS1, SR protein superfamily
KEGG Orthology K14396; PABPN1, polyadenylate-binding protein 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G65260 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os06g11620.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a042555 , Zm00025a049507 , Zm00025a022165 , Zm00025a033143
Brachypodium KQK18948
Barley HORVU6Hr1G077700.9 , HORVU6Hr1G077700.8 , HORVU6Hr1G077700.3 , HORVU6Hr1G077700.2 , HORVU6Hr1G077700.5 , HORVU6Hr1G077700.4 , HORVU6Hr1G077700.7 , HORVU6Hr1G077700.6 , HORVU6Hr1G077700.11 , HORVU6Hr1G077700.10 , HORVU6Hr1G077700.13 , HORVU6Hr1G077700.12
Wheat TraesCS6D02G295600 , TraesCS7D02G179700 , TraesCS7D02G179700 , TraesCS7B02G083600 , TraesCS7A02G177900 , TraesCS7A02G177900 , TraesCS6A02G316300 , TraesCS6A02G316300 , TraesCS6B02G346800 , TraesCS6B02G346800 , TraesCS6B02G346800
Populus -


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cDNA sequences
Sobic.010G088000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G047100 OTU-like cysteine protease family protein, putative, expressed K18342: OTU domain-containing protein 6
2 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
3 Sobic.009G218800 Divergent PAP2 family domain containing protein, expressed K09775: uncharacterized protein
4 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
5 Sobic.004G085200 protein of unknown function domain containing protein, expressed -
6 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -
7 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
8 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
9 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
10 Sobic.001G405900 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
11 Sobic.009G206700 proteasome maturation factor UMP1 family protein, expressed K11599: POMP, proteasome maturation protein
12 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
13 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
14 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
15 Sobic.001G116700 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
16 Sobic.010G103900 ribosomal protein L51, putative, expressed K17424: large subunit ribosomal protein L43
17 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
18 Sobic.009G111600 expressed protein -
19 Sobic.003G302100 expressed protein -
20 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2


Gene co-expression network
sample Sobic010G088000 Sobic010G088000 Sobic001G047100 Sobic001G047100 Sobic010G088000--Sobic001G047100 Sobic003G124800 Sobic003G124800 Sobic010G088000--Sobic003G124800 Sobic009G218800 Sobic009G218800 Sobic010G088000--Sobic009G218800 Sobic006G252200 Sobic006G252200 Sobic010G088000--Sobic006G252200 Sobic004G085200 Sobic004G085200 Sobic010G088000--Sobic004G085200 Sobic006G002700 Sobic006G002700 Sobic010G088000--Sobic006G002700 Sobic010G008100 Sobic010G008100 Sobic010G088000--Sobic010G008100 Sobic001G439600 Sobic001G439600 Sobic010G088000--Sobic001G439600 Sobic001G096100 Sobic001G096100 Sobic010G088000--Sobic001G096100 Sobic002G258800 Sobic002G258800 Sobic001G047100--Sobic002G258800 Sobic002G261800 Sobic002G261800 Sobic001G047100--Sobic002G261800 Sobic001G467300 Sobic001G467300 Sobic001G047100--Sobic001G467300 Sobic001G216200 Sobic001G216200 Sobic001G047100--Sobic001G216200 Sobic009G065400 Sobic009G065400 Sobic001G047100--Sobic009G065400 Sobic002G282400 Sobic002G282400 Sobic001G047100--Sobic002G282400 Sobic001G089500 Sobic001G089500 Sobic001G047100--Sobic001G089500 Sobic007G019100 Sobic007G019100 Sobic001G047100--Sobic007G019100 Sobic003G332401 Sobic003G332401 Sobic001G047100--Sobic003G332401 Sobic009G198500 Sobic009G198500 Sobic003G124800--Sobic009G198500 Sobic003G124800--Sobic001G439600 Sobic006G232200 Sobic006G232200 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic007G045600 Sobic007G045600 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic004G014000 Sobic004G014000 Sobic009G218800--Sobic004G014000 Sobic001G294000 Sobic001G294000 Sobic009G218800--Sobic001G294000 Sobic004G300900 Sobic004G300900 Sobic009G218800--Sobic004G300900 Sobic004G272300 Sobic004G272300 Sobic009G218800--Sobic004G272300 Sobic009G218800--Sobic009G198500 Sobic008G097401 Sobic008G097401 Sobic009G218800--Sobic008G097401 Sobic004G305600 Sobic004G305600 Sobic009G218800--Sobic004G305600 Sobic009G249000 Sobic009G249000 Sobic009G218800--Sobic009G249000 Sobic009G218800--Sobic001G529000 Sobic007G176200 Sobic007G176200 Sobic006G252200--Sobic007G176200 Sobic001G458700 Sobic001G458700 Sobic006G252200--Sobic001G458700 Sobic004G224900 Sobic004G224900 Sobic006G252200--Sobic004G224900 Sobic001G010700 Sobic001G010700 Sobic006G252200--Sobic001G010700 Sobic003G330500 Sobic003G330500 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100 Sobic002G364100 Sobic002G364100 Sobic004G085200--Sobic002G364100 Sobic010G103900 Sobic010G103900 Sobic004G085200--Sobic010G103900 Sobic003G025200 Sobic003G025200 Sobic004G085200--Sobic003G025200 Sobic002G364500 Sobic002G364500 Sobic004G085200--Sobic002G364500 Sobic009G022400 Sobic009G022400 Sobic004G085200--Sobic009G022400 Sobic002G049300 Sobic002G049300 Sobic004G085200--Sobic002G049300 Sobic004G198500 Sobic004G198500 Sobic004G085200--Sobic004G198500 Sobic006G260400 Sobic006G260400 Sobic004G085200--Sobic006G260400 Sobic004G322200 Sobic004G322200 Sobic004G085200--Sobic004G322200 Sobic006G002700--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic006G002700--Sobic001G007600 Sobic001G110400 Sobic001G110400 Sobic006G002700--Sobic001G110400 Sobic006G002700--Sobic004G224900 Sobic009G238900 Sobic009G238900 Sobic006G002700--Sobic009G238900 Sobic006G002700--Sobic001G096100 Sobic006G002700--Sobic001G502200 Sobic009G088100 Sobic009G088100 Sobic006G002700--Sobic009G088100 Sobic002G392800 Sobic002G392800 Sobic006G002700--Sobic002G392800 Sobic001G403700 Sobic001G403700 Sobic010G008100--Sobic001G403700 Sobic009G008600 Sobic009G008600 Sobic010G008100--Sobic009G008600 Sobic008G132800 Sobic008G132800 Sobic010G008100--Sobic008G132800 Sobic009G104000 Sobic009G104000 Sobic010G008100--Sobic009G104000 Sobic003G424800 Sobic003G424800 Sobic010G008100--Sobic003G424800 Sobic010G213400 Sobic010G213400 Sobic010G008100--Sobic010G213400 Sobic002G078400 Sobic002G078400 Sobic010G008100--Sobic002G078400 Sobic001G331900 Sobic001G331900 Sobic010G008100--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic010G008100--Sobic005G157200 Sobic001G439600--Sobic003G124800 Sobic002G129000 Sobic002G129000 Sobic001G439600--Sobic002G129000 Sobic010G083700 Sobic010G083700 Sobic001G439600--Sobic010G083700 Sobic001G294900 Sobic001G294900 Sobic001G439600--Sobic001G294900 Sobic001G136900 Sobic001G136900 Sobic001G439600--Sobic001G136900 Sobic001G054200 Sobic001G054200 Sobic001G439600--Sobic001G054200 Sobic010G168600 Sobic010G168600 Sobic001G439600--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic001G439600--Sobic002G256300 Sobic001G439600--Sobic001G529000 Sobic001G096100--Sobic004G066800 Sobic001G096100--Sobic004G138800 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700
Octagon: transcription factors


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