Gene annotation
Transcriptome id Sobic.001G405900.1
Synonym RANBP1, Sb01g038390
Functional annotation ranBP1 domain containing protein, expressed
UniProt C5WNI3
Pfam PF00638
Panther DB PTHR23138 PTHR23138:SF95
NCBI CDD KOG0864; Ran-binding protein RANBP1 and related RanBD domain proteins
KEGG Orthology K15306; Ran-binding protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58590 : RAN binding protein 1
RAP-DB (Rice) LOC_Os03g18180.1 : ranBP1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052649 , Zm00025a002000
Brachypodium PNT77595
Barley HORVU4Hr1G056140.5 , HORVU4Hr1G056140.1 , HORVU4Hr1G056140.4 , HORVU4Hr1G056140.6 , HORVU4Hr1G056140.2 , HORVU4Hr1G056140.3
Wheat TraesCS4D02G194600 , TraesCS4B02G193600 , TraesCS4A02G110400
Populus -


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cDNA sequences
Sobic.001G405900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G206700 proteasome maturation factor UMP1 family protein, expressed K11599: POMP, proteasome maturation protein
2 Sobic.010G279000 expressed protein -
3 Sobic.009G182300 - -
4 Sobic.003G373100 patellin protein, putative, expressed -
5 Sobic.004G244800 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
6 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
7 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
8 Sobic.002G343500 CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
9 Sobic.001G324900 proline-rich family protein, putative, expressed -
10 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
11 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -
12 Sobic.010G088000 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
13 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
14 Sobic.001G116700 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
15 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
16 Sobic.002G270000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BAG domain-containing protein, putative, expressed -
17 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
18 Sobic.001G294400 CAMK_CAMK_like.41 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
19 Sobic.006G131400 expressed protein -
20 Sobic.003G043700 expressed protein -


Gene co-expression network
sample Sobic001G405900 Sobic001G405900 Sobic009G206700 Sobic009G206700 Sobic001G405900--Sobic009G206700 Sobic010G279000 Sobic010G279000 Sobic001G405900--Sobic010G279000 Sobic009G182300 Sobic009G182300 Sobic001G405900--Sobic009G182300 Sobic003G373100 Sobic003G373100 Sobic001G405900--Sobic003G373100 Sobic004G244800 Sobic004G244800 Sobic001G405900--Sobic004G244800 Sobic004G212300 Sobic004G212300 Sobic001G405900--Sobic004G212300 Sobic001G007600 Sobic001G007600 Sobic001G405900--Sobic001G007600 Sobic002G343500 Sobic002G343500 Sobic001G405900--Sobic002G343500 Sobic001G324900 Sobic001G324900 Sobic001G405900--Sobic001G324900 Sobic006G057200 Sobic006G057200 Sobic009G206700--Sobic006G057200 Sobic010G264300 Sobic010G264300 Sobic009G206700--Sobic010G264300 Sobic001G286200 Sobic001G286200 Sobic009G206700--Sobic001G286200 Sobic002G246200 Sobic002G246200 Sobic009G206700--Sobic002G246200 Sobic009G206700--Sobic004G244800 Sobic009G212200 Sobic009G212200 Sobic009G206700--Sobic009G212200 Sobic001G519000 Sobic001G519000 Sobic009G206700--Sobic001G519000 Sobic001G175300 Sobic001G175300 Sobic009G206700--Sobic001G175300 Sobic002G356400 Sobic002G356400 Sobic009G206700--Sobic002G356400 Sobic001G196100 Sobic001G196100 Sobic010G279000--Sobic001G196100 Sobic002G309500 Sobic002G309500 Sobic010G279000--Sobic002G309500 Sobic001G230100 Sobic001G230100 Sobic010G279000--Sobic001G230100 Sobic010G279000--Sobic001G405900 Sobic001G116000 Sobic001G116000 Sobic010G279000--Sobic001G116000 Sobic001G035400 Sobic001G035400 Sobic010G279000--Sobic001G035400 Sobic003G217100 Sobic003G217100 Sobic010G279000--Sobic003G217100 Sobic010G038700 Sobic010G038700 Sobic010G279000--Sobic010G038700 Sobic010G279000--Sobic001G007600 Sobic009G182300--Sobic001G007600 Sobic004G138800 Sobic004G138800 Sobic009G182300--Sobic004G138800 Sobic001G505500 Sobic001G505500 Sobic009G182300--Sobic001G505500 Sobic001G418900 Sobic001G418900 Sobic009G182300--Sobic001G418900 Sobic003G443300 Sobic003G443300 Sobic009G182300--Sobic003G443300 Sobic005G017300 Sobic005G017300 Sobic009G182300--Sobic005G017300 Sobic010G210000 Sobic010G210000 Sobic009G182300--Sobic010G210000 Sobic004G344500 Sobic004G344500 Sobic009G182300--Sobic004G344500 Sobic003G127700 Sobic003G127700 Sobic009G182300--Sobic003G127700 Sobic009G073300 Sobic009G073300 Sobic003G373100--Sobic009G073300 Sobic001G532200 Sobic001G532200 Sobic003G373100--Sobic001G532200 Sobic003G373100--Sobic004G212300 Sobic001G113700 Sobic001G113700 Sobic003G373100--Sobic001G113700 Sobic009G208800 Sobic009G208800 Sobic003G373100--Sobic009G208800 Sobic008G151300 Sobic008G151300 Sobic003G373100--Sobic008G151300 Sobic004G288700 Sobic004G288700 Sobic003G373100--Sobic004G288700 Sobic001G516600 Sobic001G516600 Sobic003G373100--Sobic001G516600 Sobic005G231700 Sobic005G231700 Sobic003G373100--Sobic005G231700 Sobic004G244800--Sobic006G057200 Sobic002G179300 Sobic002G179300 Sobic004G244800--Sobic002G179300 Sobic010G069400 Sobic010G069400 Sobic004G244800--Sobic010G069400 Sobic001G510800 Sobic001G510800 Sobic004G244800--Sobic001G510800 Sobic001G225700 Sobic001G225700 Sobic004G244800--Sobic001G225700 Sobic008G108601 Sobic008G108601 Sobic004G244800--Sobic008G108601 Sobic008G135000 Sobic008G135000 Sobic004G244800--Sobic008G135000 Sobic004G244800--Sobic001G175300 Sobic002G049300 Sobic002G049300 Sobic004G244800--Sobic002G049300 Sobic010G052200 Sobic010G052200 Sobic004G212300--Sobic010G052200 Sobic004G212300--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic001G084100 Sobic001G084100 Sobic004G212300--Sobic001G084100 Sobic004G212300--Sobic001G516600 Sobic006G156000 Sobic006G156000 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic001G007600--Sobic004G138800 Sobic009G067000 Sobic009G067000 Sobic001G007600--Sobic009G067000 Sobic001G007600--Sobic001G418900 Sobic001G007600--Sobic003G443300 Sobic001G007600--Sobic001G505500 Sobic003G368500 Sobic003G368500 Sobic001G007600--Sobic003G368500 Sobic006G252200 Sobic006G252200 Sobic001G007600--Sobic006G252200 Sobic001G007600--Sobic009G182300 Sobic007G076300 Sobic007G076300 Sobic001G007600--Sobic007G076300 Sobic002G343500--Sobic001G516600 Sobic006G131400 Sobic006G131400 Sobic002G343500--Sobic006G131400 Sobic002G353400 Sobic002G353400 Sobic002G343500--Sobic002G353400 Sobic002G374100 Sobic002G374100 Sobic002G343500--Sobic002G374100 Sobic006G182100 Sobic006G182100 Sobic002G343500--Sobic006G182100 Sobic001G173300 Sobic001G173300 Sobic002G343500--Sobic001G173300 Sobic010G228000 Sobic010G228000 Sobic002G343500--Sobic010G228000 Sobic003G296700 Sobic003G296700 Sobic002G343500--Sobic003G296700 Sobic002G294700 Sobic002G294700 Sobic002G343500--Sobic002G294700 Sobic002G022400 Sobic002G022400 Sobic001G324900--Sobic002G022400 Sobic004G247200 Sobic004G247200 Sobic001G324900--Sobic004G247200 Sobic001G525400 Sobic001G525400 Sobic001G324900--Sobic001G525400 Sobic002G280200 Sobic002G280200 Sobic001G324900--Sobic002G280200 Sobic008G161000 Sobic008G161000 Sobic001G324900--Sobic008G161000 Sobic003G249800 Sobic003G249800 Sobic001G324900--Sobic003G249800 Sobic006G062800 Sobic006G062800 Sobic001G324900--Sobic006G062800 Sobic010G217900 Sobic010G217900 Sobic001G324900--Sobic010G217900 Sobic010G204300 Sobic010G204300 Sobic001G324900--Sobic010G204300
Octagon: transcription factors


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