Gene annotation
Transcriptome id Sobic.010G279000.1
Synonym Sb10g031240
Functional annotation expressed protein
UniProt C5Z2N2
Pfam PF01086
Panther DB PTHR10639 PTHR10639:SF11
NCBI CDD KOG4031; Vesicle coat protein clathrin, light chain
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT2G40060 : Clathrin light chain protein
RAP-DB (Rice) LOC_Os06g51510.1 : expressed protein
MaizeGDB (Corn) Zm00025a018596
Brachypodium KQK16569
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G279000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
2 Sobic.002G309500 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
3 Sobic.001G230100 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
4 Sobic.001G405900 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
5 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
6 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
7 Sobic.003G217100 Yip1 domain containing protein, expressed -
8 Sobic.010G038700 expressed protein -
9 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
10 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
11 Sobic.003G305601 - -
12 Sobic.009G042900 expressed protein K17411: small subunit ribosomal protein S33
13 Sobic.006G257001 - -
14 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
15 Sobic.008G127500 expressed protein -
16 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
17 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
18 Sobic.009G171100 prenylated rab acceptor, putative, expressed -
19 Sobic.003G322300 expressed protein -
20 Sobic.009G164700 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A


Gene co-expression network
sample Sobic010G279000 Sobic010G279000 Sobic001G196100 Sobic001G196100 Sobic010G279000--Sobic001G196100 Sobic002G309500 Sobic002G309500 Sobic010G279000--Sobic002G309500 Sobic001G230100 Sobic001G230100 Sobic010G279000--Sobic001G230100 Sobic001G405900 Sobic001G405900 Sobic010G279000--Sobic001G405900 Sobic001G116000 Sobic001G116000 Sobic010G279000--Sobic001G116000 Sobic001G035400 Sobic001G035400 Sobic010G279000--Sobic001G035400 Sobic003G217100 Sobic003G217100 Sobic010G279000--Sobic003G217100 Sobic010G038700 Sobic010G038700 Sobic010G279000--Sobic010G038700 Sobic001G007600 Sobic001G007600 Sobic010G279000--Sobic001G007600 Sobic001G196100--Sobic001G116000 Sobic007G044400 Sobic007G044400 Sobic001G196100--Sobic007G044400 Sobic001G281900 Sobic001G281900 Sobic001G196100--Sobic001G281900 Sobic001G196100--Sobic001G035400 Sobic001G418000 Sobic001G418000 Sobic001G196100--Sobic001G418000 Sobic002G087000 Sobic002G087000 Sobic001G196100--Sobic002G087000 Sobic003G319000 Sobic003G319000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G530800 Sobic001G530800 Sobic001G196100--Sobic001G530800 Sobic006G058900 Sobic006G058900 Sobic002G309500--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic002G309500--Sobic004G202100 Sobic001G050700 Sobic001G050700 Sobic002G309500--Sobic001G050700 Sobic007G159700 Sobic007G159700 Sobic002G309500--Sobic007G159700 Sobic002G395000 Sobic002G395000 Sobic002G309500--Sobic002G395000 Sobic001G031900 Sobic001G031900 Sobic002G309500--Sobic001G031900 Sobic004G262300 Sobic004G262300 Sobic002G309500--Sobic004G262300 Sobic002G309500--Sobic003G322300 Sobic004G297700 Sobic004G297700 Sobic002G309500--Sobic004G297700 Sobic001G338400 Sobic001G338400 Sobic001G230100--Sobic001G338400 Sobic001G110400 Sobic001G110400 Sobic001G230100--Sobic001G110400 Sobic003G348800 Sobic003G348800 Sobic001G230100--Sobic003G348800 Sobic001G230100--Sobic001G007600 Sobic008G088830 Sobic008G088830 Sobic001G230100--Sobic008G088830 Sobic009G229300 Sobic009G229300 Sobic001G230100--Sobic009G229300 Sobic001G230100--Sobic001G281900 Sobic009G104000 Sobic009G104000 Sobic001G230100--Sobic009G104000 Sobic004G082900 Sobic004G082900 Sobic001G230100--Sobic004G082900 Sobic009G206700 Sobic009G206700 Sobic001G405900--Sobic009G206700 Sobic001G405900--Sobic010G279000 Sobic009G182300 Sobic009G182300 Sobic001G405900--Sobic009G182300 Sobic003G373100 Sobic003G373100 Sobic001G405900--Sobic003G373100 Sobic004G244800 Sobic004G244800 Sobic001G405900--Sobic004G244800 Sobic004G212300 Sobic004G212300 Sobic001G405900--Sobic004G212300 Sobic001G405900--Sobic001G007600 Sobic002G343500 Sobic002G343500 Sobic001G405900--Sobic002G343500 Sobic001G324900 Sobic001G324900 Sobic001G405900--Sobic001G324900 Sobic001G116000--Sobic001G196100 Sobic001G116000--Sobic001G035400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G026600 Sobic001G026600 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000 Sobic004G344800 Sobic004G344800 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic001G035400--Sobic002G087000 Sobic001G073600 Sobic001G073600 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G035400--Sobic001G116000 Sobic001G105100 Sobic001G105100 Sobic003G217100--Sobic001G105100 Sobic002G090700 Sobic002G090700 Sobic003G217100--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic003G217100--Sobic008G132800 Sobic006G222400 Sobic006G222400 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic001G237500 Sobic001G237500 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic001G096100 Sobic001G096100 Sobic010G038700--Sobic001G096100 Sobic009G045800 Sobic009G045800 Sobic010G038700--Sobic009G045800 Sobic001G018200 Sobic001G018200 Sobic010G038700--Sobic001G018200 Sobic003G330500 Sobic003G330500 Sobic010G038700--Sobic003G330500 Sobic010G038700--Sobic004G262300 Sobic001G481700 Sobic001G481700 Sobic010G038700--Sobic001G481700 Sobic008G127500 Sobic008G127500 Sobic010G038700--Sobic008G127500 Sobic009G168000 Sobic009G168000 Sobic010G038700--Sobic009G168000 Sobic001G025600 Sobic001G025600 Sobic010G038700--Sobic001G025600 Sobic004G138800 Sobic004G138800 Sobic001G007600--Sobic004G138800 Sobic009G067000 Sobic009G067000 Sobic001G007600--Sobic009G067000 Sobic001G418900 Sobic001G418900 Sobic001G007600--Sobic001G418900 Sobic003G443300 Sobic003G443300 Sobic001G007600--Sobic003G443300 Sobic001G505500 Sobic001G505500 Sobic001G007600--Sobic001G505500 Sobic003G368500 Sobic003G368500 Sobic001G007600--Sobic003G368500 Sobic006G252200 Sobic006G252200 Sobic001G007600--Sobic006G252200 Sobic001G007600--Sobic009G182300 Sobic007G076300 Sobic007G076300 Sobic001G007600--Sobic007G076300
Octagon: transcription factors


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