Gene annotation
Transcriptome id Sobic.003G305601.1
Synonym -
Functional annotation -
UniProt A0A1W0VZN4
Pfam PF07983
Panther DB PTHR32227 PTHR32227:SF87
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18650 : plasmodesmata callose-binding protein 3
RAP-DB (Rice) LOC_Os01g55820.1 : X8 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016775 , Zm00025a027447 , Zm00025a048296 , Zm00025a008209 , Zm00025a014851
Brachypodium KQJ86083 , PNT62429 , KQK09884 , KQK15883 , KQK13126
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
2 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
3 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
4 Sobic.005G168100 ADP-ribosylation factor, putative, expressed K07950: ADP-ribosylation factor-like protein 5B
5 Sobic.002G343500 CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
6 Sobic.002G210300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed -
7 Sobic.004G334800 vacuolar protein sorting 55 family protein, putative, expressed -
8 Sobic.001G113700 cytochrome b561, putative, expressed K08360: cytochrome b-561
9 Sobic.009G220200 exostosin family domain containing protein, expressed -
10 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
11 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
12 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
13 Sobic.006G182100 ORM1, putative, expressed -
14 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
15 Sobic.002G124700 up-regulated by silicon application(PubMedID : 24879770)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
16 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
17 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
18 Sobic.001G217000 DUF584 domain containing protein, putative, expressed -
19 Sobic.008G161000 protein kinase domain containing protein, expressed -
20 Sobic.007G124301 - -


Gene co-expression network
sample Sobic003G305601 Sobic003G305601 Sobic006G156000 Sobic006G156000 Sobic003G305601--Sobic006G156000 Sobic004G212300 Sobic004G212300 Sobic003G305601--Sobic004G212300 Sobic001G084100 Sobic001G084100 Sobic003G305601--Sobic001G084100 Sobic005G168100 Sobic005G168100 Sobic003G305601--Sobic005G168100 Sobic002G343500 Sobic002G343500 Sobic003G305601--Sobic002G343500 Sobic002G210300 Sobic002G210300 Sobic003G305601--Sobic002G210300 Sobic004G334800 Sobic004G334800 Sobic003G305601--Sobic004G334800 Sobic001G113700 Sobic001G113700 Sobic003G305601--Sobic001G113700 Sobic009G220200 Sobic009G220200 Sobic003G305601--Sobic009G220200 Sobic003G443300 Sobic003G443300 Sobic006G156000--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic006G156000--Sobic001G432000 Sobic006G156000--Sobic005G168100 Sobic003G219800 Sobic003G219800 Sobic006G156000--Sobic003G219800 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100 Sobic010G052200 Sobic010G052200 Sobic004G212300--Sobic010G052200 Sobic001G532200 Sobic001G532200 Sobic004G212300--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic004G212300--Sobic001G084100 Sobic001G516600 Sobic001G516600 Sobic004G212300--Sobic001G516600 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic001G084100--Sobic001G532200 Sobic001G173300 Sobic001G173300 Sobic001G084100--Sobic001G173300 Sobic001G084100--Sobic006G156000 Sobic001G084100--Sobic010G052200 Sobic001G084100--Sobic005G168100 Sobic001G084100--Sobic004G212300 Sobic001G084100--Sobic003G119500 Sobic001G084100--Sobic003G219800 Sobic001G418100 Sobic001G418100 Sobic001G084100--Sobic001G418100 Sobic009G232900 Sobic009G232900 Sobic005G168100--Sobic009G232900 Sobic005G168100--Sobic001G432000 Sobic005G168100--Sobic006G156000 Sobic003G155400 Sobic003G155400 Sobic005G168100--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic005G168100--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic005G168100--Sobic002G296200 Sobic002G418400 Sobic002G418400 Sobic005G168100--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic005G168100--Sobic003G215700 Sobic003G150000 Sobic003G150000 Sobic005G168100--Sobic003G150000 Sobic002G343500--Sobic001G516600 Sobic006G131400 Sobic006G131400 Sobic002G343500--Sobic006G131400 Sobic002G353400 Sobic002G353400 Sobic002G343500--Sobic002G353400 Sobic002G374100 Sobic002G374100 Sobic002G343500--Sobic002G374100 Sobic006G182100 Sobic006G182100 Sobic002G343500--Sobic006G182100 Sobic002G343500--Sobic001G173300 Sobic010G228000 Sobic010G228000 Sobic002G343500--Sobic010G228000 Sobic003G296700 Sobic003G296700 Sobic002G343500--Sobic003G296700 Sobic002G294700 Sobic002G294700 Sobic002G343500--Sobic002G294700 Sobic009G027900 Sobic009G027900 Sobic002G210300--Sobic009G027900 Sobic003G338900 Sobic003G338900 Sobic002G210300--Sobic003G338900 Sobic001G217000 Sobic001G217000 Sobic002G210300--Sobic001G217000 Sobic003G012800 Sobic003G012800 Sobic002G210300--Sobic003G012800 Sobic002G210300--Sobic009G220200 Sobic001G051800 Sobic001G051800 Sobic002G210300--Sobic001G051800 Sobic003G339100 Sobic003G339100 Sobic002G210300--Sobic003G339100 Sobic002G272900 Sobic002G272900 Sobic002G210300--Sobic002G272900 Sobic002G210300--Sobic001G113700 Sobic004G224800 Sobic004G224800 Sobic004G334800--Sobic004G224800 Sobic004G066800 Sobic004G066800 Sobic004G334800--Sobic004G066800 Sobic004G196300 Sobic004G196300 Sobic004G334800--Sobic004G196300 Sobic007G114200 Sobic007G114200 Sobic004G334800--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic004G334800--Sobic007G019100 Sobic002G090700 Sobic002G090700 Sobic004G334800--Sobic002G090700 Sobic004G327300 Sobic004G327300 Sobic004G334800--Sobic004G327300 Sobic002G078400 Sobic002G078400 Sobic004G334800--Sobic002G078400 Sobic001G403700 Sobic001G403700 Sobic004G334800--Sobic001G403700 Sobic001G113700--Sobic009G220200 Sobic001G113700--Sobic001G217000 Sobic001G113700--Sobic001G051800 Sobic001G113700--Sobic002G210300 Sobic001G113700--Sobic003G338900 Sobic009G208800 Sobic009G208800 Sobic001G113700--Sobic009G208800 Sobic005G231700 Sobic005G231700 Sobic001G113700--Sobic005G231700 Sobic002G379400 Sobic002G379400 Sobic001G113700--Sobic002G379400 Sobic001G113700--Sobic003G296700 Sobic009G220200--Sobic009G208800 Sobic009G220200--Sobic003G296700 Sobic009G220200--Sobic001G051800 Sobic009G220200--Sobic001G516600 Sobic009G220200--Sobic001G173300 Sobic004G257300 Sobic004G257300 Sobic009G220200--Sobic004G257300 Sobic009G220200--Sobic002G374100 Sobic002G362900 Sobic002G362900 Sobic009G220200--Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic009G220200--Sobic007G188100
Octagon: transcription factors


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