Gene annotation
| Transcriptome id | Sobic.009G220200.1 |
|---|---|
| Synonym | Sb09g027450, GUT1 |
| Functional annotation | exostosin family domain containing protein, expressed |
| UniProt | C5YUZ7 |
| Pfam | PF03016 |
| Panther DB | PTHR11062 PTHR11062:SF105 |
| NCBI CDD | KOG1021; Acetylglucosaminyltransferase EXT1/exostosin 1 |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G27440 : Exostosin family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g70190.1 : exostosin family domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a044449 , Zm00025a039247 , Zm00025a026206 , Zm00025a026205 |
| Brachypodium | KQK11313 |
| Barley | HORVU3Hr1G096140.7 , HORVU3Hr1G096140.6 , HORVU3Hr1G096140.5 , HORVU3Hr1G096140.4 , HORVU3Hr1G096140.3 , HORVU3Hr1G096140.2 , HORVU3Hr1G096140.1 , HORVU3Hr1G096140.9 , HORVU3Hr1G096140.8 , HORVU3Hr1G096140.10 , HORVU3Hr1G096210.3 , HORVU3Hr1G096210.2 , HORVU3Hr1G096210.1 , HORVU3Hr1G096210.7 , HORVU3Hr1G096210.6 , HORVU3Hr1G096210.5 , HORVU3Hr1G096210.4 , HORVU3Hr1G096210.9 , HORVU3Hr1G096210.8 , HORVU3Hr1G096210.11 , HORVU3Hr1G096210.10 |
| Wheat | TraesCS3D02G432900 , TraesCS3A02G440100 , TraesCS3B02G474900 , TraesCS3B02G474900 , TraesCS3D02G433400 , TraesCS3D02G433400 , TraesCS3B02G474200 |
| Populus | - |
JBrowse
| Sobic.009G220200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G208800 | hydrolase, acting on carbon-nitrogen, putative, expressed | - |
| 2 | Sobic.003G296700 | protein kinase domain containing protein, expressed | - |
| 3 | Sobic.001G051800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBDUF18 - F-box and DUF domain containing protein, expressed | - |
| 4 | Sobic.001G516600 | AMP-binding domain containing protein, expressed | K10526: OPC-8:0 CoA ligase 1 |
| 5 | Sobic.001G173300 | alpha-1,4-glucan-protein synthase, putative, expressed | K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase |
| 6 | Sobic.004G257300 | GPI-anchored protein, putative, expressed | - |
| 7 | Sobic.002G374100 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 8 | Sobic.002G362900 | IBS1, putative, expressed | - |
| 9 | Sobic.007G188100 | Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed | K13429: chitin elicitor receptor kinase 1 |
| 10 | Sobic.001G113700 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
| 11 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 12 | Sobic.002G353400 | transporter-related, putative, expressed | K15285: solute carrier family 35, member E3 |
| 13 | Sobic.002G343500 | CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 14 | Sobic.001G513700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed | - |
| 15 | Sobic.004G212300 | determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed | K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase |
| 16 | Sobic.007G057100 | expressed protein | - |
| 17 | Sobic.010G228000 | Protein kinase domain containing protein, expressed | - |
| 18 | Sobic.001G532200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed | - |
| 19 | Sobic.004G036600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed | - |
| 20 | Sobic.003G111500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyprenyl synthetase, putative, expressed | K13789: geranylgeranyl diphosphate synthase, type II |
Gene co-expression network
Octagon: transcription factors
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