Gene annotation
Transcriptome id Sobic.003G043700.1
Synonym Sb03g003840
Functional annotation expressed protein
UniProt C5XMQ7
Pfam -
Panther DB PTHR33124 PTHR33124:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05800 : AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1
RAP-DB (Rice) LOC_Os01g14110.1 : expressed protein
MaizeGDB (Corn) Zm00025a035755
Brachypodium KQK03557
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G043700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G161601 - K14484: auxin-responsive protein IAA
2 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
3 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
4 Sobic.001G111000 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
5 Sobic.003G016100 expressed protein -
6 Sobic.001G161500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA12 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
7 Sobic.003G219800 transferase family protein, putative, expressed -
8 Sobic.009G035300 expressed protein -
9 Sobic.003G316000 expressed protein -
10 Sobic.003G418766 - -
11 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.002G327300 expressed protein -
14 Sobic.003G429200 NADPH quinone oxidoreductase, putative, expressed -
15 Sobic.006G203700 EF hand family protein, putative, expressed -
16 Sobic.009G232100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
17 Sobic.004G318700 OsSub22 - Putative Subtilisin homologue, expressed -
18 Sobic.001G494000 Expressed in older stem(PubMedID : 28649278)@homeodomain protein, putative, expressed -
19 Sobic.003G363900 glycosyl hydrolase, putative, expressed K01183: chitinase
20 Sobic.001G304201 - -


Gene co-expression network
sample Sobic003G043700 Sobic003G043700 Sobic001G161601 Sobic001G161601 Sobic003G043700--Sobic001G161601 Sobic004G042000 Sobic004G042000 Sobic003G043700--Sobic004G042000 Sobic002G213600 Sobic002G213600 Sobic003G043700--Sobic002G213600 Sobic001G111000 Sobic001G111000 Sobic003G043700--Sobic001G111000 Sobic003G016100 Sobic003G016100 Sobic003G043700--Sobic003G016100 Sobic001G161500 Sobic001G161500 Sobic003G043700--Sobic001G161500 Sobic003G219800 Sobic003G219800 Sobic003G043700--Sobic003G219800 Sobic009G035300 Sobic009G035300 Sobic003G043700--Sobic009G035300 Sobic003G316000 Sobic003G316000 Sobic003G043700--Sobic003G316000 Sobic001G161601--Sobic003G043700 Sobic001G161601--Sobic001G161500 Sobic002G350700 Sobic002G350700 Sobic001G161601--Sobic002G350700 Sobic001G059700 Sobic001G059700 Sobic001G161601--Sobic001G059700 Sobic010G085800 Sobic010G085800 Sobic001G161601--Sobic010G085800 Sobic004G318700 Sobic004G318700 Sobic001G161601--Sobic004G318700 Sobic009G232100 Sobic009G232100 Sobic001G161601--Sobic009G232100 Sobic001G112100 Sobic001G112100 Sobic001G161601--Sobic001G112100 Sobic001G161601--Sobic002G213600 Sobic006G197100 Sobic006G197100 Sobic004G042000--Sobic006G197100 Sobic002G003800 Sobic002G003800 Sobic004G042000--Sobic002G003800 Sobic004G349125 Sobic004G349125 Sobic004G042000--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic004G042000--Sobic001G416200 Sobic004G042000--Sobic002G213600 Sobic001G302600 Sobic001G302600 Sobic004G042000--Sobic001G302600 Sobic003G311800 Sobic003G311800 Sobic004G042000--Sobic003G311800 Sobic001G304201 Sobic001G304201 Sobic004G042000--Sobic001G304201 Sobic001G264000 Sobic001G264000 Sobic004G042000--Sobic001G264000 Sobic001G304100 Sobic001G304100 Sobic002G213600--Sobic001G304100 Sobic002G213600--Sobic004G042000 Sobic002G213600--Sobic003G016100 Sobic003G319500 Sobic003G319500 Sobic002G213600--Sobic003G319500 Sobic003G053300 Sobic003G053300 Sobic002G213600--Sobic003G053300 Sobic002G213600--Sobic002G003800 Sobic002G213600--Sobic004G318700 Sobic010G063000 Sobic010G063000 Sobic002G213600--Sobic010G063000 Sobic002G213600--Sobic001G304201 Sobic006G057200 Sobic006G057200 Sobic001G111000--Sobic006G057200 Sobic001G111000--Sobic003G016100 Sobic001G111000--Sobic004G042000 Sobic001G361600 Sobic001G361600 Sobic001G111000--Sobic001G361600 Sobic001G111000--Sobic003G219800 Sobic005G142300 Sobic005G142300 Sobic001G111000--Sobic005G142300 Sobic003G264600 Sobic003G264600 Sobic001G111000--Sobic003G264600 Sobic003G160700 Sobic003G160700 Sobic001G111000--Sobic003G160700 Sobic003G078200 Sobic003G078200 Sobic001G111000--Sobic003G078200 Sobic003G016100--Sobic002G213600 Sobic004G046200 Sobic004G046200 Sobic003G016100--Sobic004G046200 Sobic010G067400 Sobic010G067400 Sobic003G016100--Sobic010G067400 Sobic009G187200 Sobic009G187200 Sobic003G016100--Sobic009G187200 Sobic003G016100--Sobic004G042000 Sobic003G079400 Sobic003G079400 Sobic003G016100--Sobic003G079400 Sobic003G084400 Sobic003G084400 Sobic003G016100--Sobic003G084400 Sobic003G016100--Sobic003G316000 Sobic003G016100--Sobic004G318700 Sobic001G161500--Sobic001G416200 Sobic001G161500--Sobic004G349125 Sobic001G161500--Sobic001G302600 Sobic001G161500--Sobic004G318700 Sobic001G161500--Sobic001G304100 Sobic001G161500--Sobic004G042000 Sobic001G161500--Sobic009G035300 Sobic001G161500--Sobic002G213600 Sobic001G161500--Sobic006G197100 Sobic001G418100 Sobic001G418100 Sobic003G219800--Sobic001G418100 Sobic009G181800 Sobic009G181800 Sobic003G219800--Sobic009G181800 Sobic001G444800 Sobic001G444800 Sobic003G219800--Sobic001G444800 Sobic006G156000 Sobic006G156000 Sobic003G219800--Sobic006G156000 Sobic003G443300 Sobic003G443300 Sobic003G219800--Sobic003G443300 Sobic001G040100 Sobic001G040100 Sobic003G219800--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G219800--Sobic005G112800 Sobic005G113300 Sobic005G113300 Sobic003G219800--Sobic005G113300 Sobic009G238900 Sobic009G238900 Sobic003G219800--Sobic009G238900 Sobic009G035300--Sobic001G264000 Sobic009G035300--Sobic004G042000 Sobic009G035300--Sobic001G416200 Sobic009G035300--Sobic001G161500 Sobic009G035300--Sobic004G349125 Sobic009G035300--Sobic001G302600 Sobic009G035300--Sobic006G197100 Sobic009G035300--Sobic001G304201 Sobic009G035300--Sobic002G003800 Sobic003G316000--Sobic003G016100 Sobic003G316000--Sobic003G079400 Sobic006G150700 Sobic006G150700 Sobic003G316000--Sobic006G150700 Sobic003G316000--Sobic004G046200 Sobic007G178900 Sobic007G178900 Sobic003G316000--Sobic007G178900 Sobic002G318100 Sobic002G318100 Sobic003G316000--Sobic002G318100 Sobic007G176000 Sobic007G176000 Sobic003G316000--Sobic007G176000 Sobic003G316000--Sobic009G035300 Sobic003G316000--Sobic004G042000
Octagon: transcription factors


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