Gene annotation
Transcriptome id Sobic.004G085200.1
Synonym Sb04g007020
Functional annotation protein of unknown function domain containing protein, expressed
UniProt C5XXW6
Pfam PF01918
Panther DB PTHR31947 PTHR31947:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G34160 : Alba DNA/RNA-binding protein
RAP-DB (Rice) LOC_Os02g10810.1 : protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034611 , Zm00025a035728
Brachypodium KQK07273 , KQJ93923 , KQK02939 , KQK17776
Barley HORVU7Hr1G084100.1 , HORVU7Hr1G084100.2 , HORVU7Hr1G084100.3 , HORVU1Hr1G025500.2 , HORVU1Hr1G025500.4
Wheat TraesCS1B02G135500 , TraesCS6A02G175200 , TraesCS3B02G148300 , TraesCS3A02G129200 , TraesCS6B02G209900 , TraesCS6D02G168100 , TraesCS7D02G348900 , TraesCS1D02G117000 , TraesCS7B02G252900 , TraesCS7A02G374500 , TraesCS1A02G115600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G364100 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
2 Sobic.010G103900 ribosomal protein L51, putative, expressed K17424: large subunit ribosomal protein L43
3 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
4 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
5 Sobic.009G022400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
6 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
7 Sobic.004G198500 Brix domain containing protein, putative, expressed K14820: BRX1, ribosome biogenesis protein BRX1
8 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
9 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
10 Sobic.001G074300 40S ribosomal protein S29, putative, expressed K02980: RP-S29e, small subunit ribosomal protein S29e
11 Sobic.009G114400 expressed protein K14839: nucleolar protein 16
12 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
13 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
14 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
15 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
16 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
17 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
18 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
19 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
20 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e


Gene co-expression network
sample Sobic004G085200 Sobic004G085200 Sobic002G364100 Sobic002G364100 Sobic004G085200--Sobic002G364100 Sobic010G103900 Sobic010G103900 Sobic004G085200--Sobic010G103900 Sobic003G025200 Sobic003G025200 Sobic004G085200--Sobic003G025200 Sobic002G364500 Sobic002G364500 Sobic004G085200--Sobic002G364500 Sobic009G022400 Sobic009G022400 Sobic004G085200--Sobic009G022400 Sobic002G049300 Sobic002G049300 Sobic004G085200--Sobic002G049300 Sobic004G198500 Sobic004G198500 Sobic004G085200--Sobic004G198500 Sobic006G260400 Sobic006G260400 Sobic004G085200--Sobic006G260400 Sobic004G322200 Sobic004G322200 Sobic004G085200--Sobic004G322200 Sobic002G364100--Sobic002G364500 Sobic001G046300 Sobic001G046300 Sobic002G364100--Sobic001G046300 Sobic009G163800 Sobic009G163800 Sobic002G364100--Sobic009G163800 Sobic002G364100--Sobic006G260400 Sobic002G364100--Sobic009G022400 Sobic010G182600 Sobic010G182600 Sobic002G364100--Sobic010G182600 Sobic001G091801 Sobic001G091801 Sobic002G364100--Sobic001G091801 Sobic010G166100 Sobic010G166100 Sobic002G364100--Sobic010G166100 Sobic004G331400 Sobic004G331400 Sobic002G364100--Sobic004G331400 Sobic010G103900--Sobic004G085200 Sobic002G371100 Sobic002G371100 Sobic010G103900--Sobic002G371100 Sobic001G481700 Sobic001G481700 Sobic010G103900--Sobic001G481700 Sobic001G005900 Sobic001G005900 Sobic010G103900--Sobic001G005900 Sobic010G103900--Sobic002G364100 Sobic010G103900--Sobic009G022400 Sobic002G255100 Sobic002G255100 Sobic010G103900--Sobic002G255100 Sobic010G103900--Sobic002G364500 Sobic003G196800 Sobic003G196800 Sobic010G103900--Sobic003G196800 Sobic001G377800 Sobic001G377800 Sobic003G025200--Sobic001G377800 Sobic006G081100 Sobic006G081100 Sobic003G025200--Sobic006G081100 Sobic001G085400 Sobic001G085400 Sobic003G025200--Sobic001G085400 Sobic002G406500 Sobic002G406500 Sobic003G025200--Sobic002G406500 Sobic001G058900 Sobic001G058900 Sobic003G025200--Sobic001G058900 Sobic006G201500 Sobic006G201500 Sobic003G025200--Sobic006G201500 Sobic003G025200--Sobic002G049300 Sobic008G058300 Sobic008G058300 Sobic003G025200--Sobic008G058300 Sobic002G115000 Sobic002G115000 Sobic003G025200--Sobic002G115000 Sobic002G364500--Sobic002G364100 Sobic003G363800 Sobic003G363800 Sobic002G364500--Sobic003G363800 Sobic002G364500--Sobic001G046300 Sobic002G364500--Sobic001G085400 Sobic001G011200 Sobic001G011200 Sobic002G364500--Sobic001G011200 Sobic002G364500--Sobic001G091801 Sobic002G364500--Sobic009G163800 Sobic001G436200 Sobic001G436200 Sobic002G364500--Sobic001G436200 Sobic002G364500--Sobic010G182600 Sobic009G022400--Sobic002G049300 Sobic007G178600 Sobic007G178600 Sobic009G022400--Sobic007G178600 Sobic009G022400--Sobic001G085400 Sobic001G175300 Sobic001G175300 Sobic009G022400--Sobic001G175300 Sobic006G221200 Sobic006G221200 Sobic009G022400--Sobic006G221200 Sobic009G022400--Sobic009G163800 Sobic003G280700 Sobic003G280700 Sobic009G022400--Sobic003G280700 Sobic008G108601 Sobic008G108601 Sobic009G022400--Sobic008G108601 Sobic004G104100 Sobic004G104100 Sobic009G022400--Sobic004G104100 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic002G049300--Sobic002G047600 Sobic002G049300--Sobic009G022400 Sobic002G049300--Sobic008G108601 Sobic003G249700 Sobic003G249700 Sobic002G049300--Sobic003G249700 Sobic002G049300--Sobic001G436200 Sobic006G137100 Sobic006G137100 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic004G198500--Sobic009G163800 Sobic004G198500--Sobic006G137100 Sobic002G374900 Sobic002G374900 Sobic004G198500--Sobic002G374900 Sobic009G050300 Sobic009G050300 Sobic004G198500--Sobic009G050300 Sobic004G198500--Sobic010G166100 Sobic009G166500 Sobic009G166500 Sobic004G198500--Sobic009G166500 Sobic003G346600 Sobic003G346600 Sobic004G198500--Sobic003G346600 Sobic004G198500--Sobic001G091801 Sobic007G138700 Sobic007G138700 Sobic004G198500--Sobic007G138700 Sobic006G260400--Sobic004G331400 Sobic002G255300 Sobic002G255300 Sobic006G260400--Sobic002G255300 Sobic006G260400--Sobic003G346600 Sobic006G260400--Sobic007G178600 Sobic010G206200 Sobic010G206200 Sobic006G260400--Sobic010G206200 Sobic006G260400--Sobic009G163800 Sobic006G260400--Sobic010G166100 Sobic001G376600 Sobic001G376600 Sobic006G260400--Sobic001G376600 Sobic006G260400--Sobic006G221200 Sobic007G019000 Sobic007G019000 Sobic004G322200--Sobic007G019000 Sobic004G322200--Sobic007G178600 Sobic004G103800 Sobic004G103800 Sobic004G322200--Sobic004G103800 Sobic004G322200--Sobic010G166100 Sobic001G054900 Sobic001G054900 Sobic004G322200--Sobic001G054900 Sobic010G230700 Sobic010G230700 Sobic004G322200--Sobic010G230700 Sobic004G322200--Sobic006G221200 Sobic004G322200--Sobic001G376600 Sobic004G322200--Sobic004G331400
Octagon: transcription factors


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