Gene annotation
Transcriptome id Sobic.003G144400.2
Synonym STM, SHL, BUM, BUM1, WAM1, WAM
Functional annotation homeobox protein knotted-1-like 6, putative, expressed
UniProt A0A1W0VXA8
Pfam PF03789
Panther DB PTHR11850 PTHR11850:SF115
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G23380 : KNOTTED1-like homeobox gene 6
RAP-DB (Rice) LOC_Os05g03884.1 : homeobox protein knotted-1-like 6, putative, expressed
MaizeGDB (Corn) Zm00025a024290 , Zm00025a040695 , Zm00025a038168
Brachypodium KQK07913
Barley HORVU1Hr1G015720.12 , HORVU1Hr1G015720.10 , HORVU1Hr1G015720.1 , HORVU1Hr1G015720.2 , HORVU1Hr1G015720.4 , HORVU1Hr1G015720.5 , HORVU1Hr1G015720.6 , HORVU1Hr1G015720.7 , HORVU1Hr1G015720.9
Wheat TraesCS1B02G091700 , TraesCS1D02G075700 , TraesCS1D02G075600 , TraesCS1A02G072800 , TraesCS1B02G091600 , TraesCS1A02G072700
Populus -


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cDNA sequences
Sobic.003G144400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G153600 WRKY94, expressed -
2 Sobic.009G045700 E3 ubiquitin-protein ligase SINA-like, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
3 Sobic.001G469400 expressed protein -
4 Sobic.001G274700 - -
5 Sobic.009G214600 possible lysine decarboxylase domain containing protein, expressed -
6 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C
7 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
8 Sobic.007G094801 - -
9 Sobic.009G114600 OsSigP6 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
10 Sobic.004G083700 expressed protein -
11 Sobic.004G315800 ZOS2-17 - C2H2 zinc finger protein, expressed -
12 Sobic.010G077600 gb protein, putative, expressed -
13 Sobic.010G144100 - -
14 Sobic.002G103500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
15 Sobic.005G077933 - -
16 Sobic.001G285400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
17 Sobic.008G068400 - -
18 Sobic.003G060400 transcription regulator, putative, expressed -
19 Sobic.002G330400 pentatricopeptide, putative, expressed -
20 Sobic.003G328700 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1


Gene co-expression network
sample Sobic003G144400 Sobic003G144400 Sobic008G153600 Sobic008G153600 Sobic003G144400--Sobic008G153600 Sobic009G045700 Sobic009G045700 Sobic003G144400--Sobic009G045700 Sobic001G469400 Sobic001G469400 Sobic003G144400--Sobic001G469400 Sobic001G274700 Sobic001G274700 Sobic003G144400--Sobic001G274700 Sobic009G214600 Sobic009G214600 Sobic003G144400--Sobic009G214600 Sobic006G038400 Sobic006G038400 Sobic003G144400--Sobic006G038400 Sobic006G204200 Sobic006G204200 Sobic003G144400--Sobic006G204200 Sobic007G094801 Sobic007G094801 Sobic003G144400--Sobic007G094801 Sobic009G114600 Sobic009G114600 Sobic003G144400--Sobic009G114600 Sobic008G153600--Sobic009G045700 Sobic008G153600--Sobic007G094801 Sobic008G136200 Sobic008G136200 Sobic008G153600--Sobic008G136200 Sobic008G034600 Sobic008G034600 Sobic008G153600--Sobic008G034600 Sobic009G197200 Sobic009G197200 Sobic008G153600--Sobic009G197200 Sobic009G087800 Sobic009G087800 Sobic008G153600--Sobic009G087800 Sobic004G211400 Sobic004G211400 Sobic008G153600--Sobic004G211400 Sobic008G153600--Sobic003G144400 Sobic007G205800 Sobic007G205800 Sobic008G153600--Sobic007G205800 Sobic002G051450 Sobic002G051450 Sobic009G045700--Sobic002G051450 Sobic006G009400 Sobic006G009400 Sobic009G045700--Sobic006G009400 Sobic006G262200 Sobic006G262200 Sobic009G045700--Sobic006G262200 Sobic009G004700 Sobic009G004700 Sobic009G045700--Sobic009G004700 Sobic010G263800 Sobic010G263800 Sobic009G045700--Sobic010G263800 Sobic010G144100 Sobic010G144100 Sobic009G045700--Sobic010G144100 Sobic009G045700--Sobic008G034600 Sobic002G144966 Sobic002G144966 Sobic009G045700--Sobic002G144966 Sobic009G045700--Sobic008G153600 Sobic001G469400--Sobic009G045700 Sobic001G469400--Sobic008G153600 Sobic001G469400--Sobic008G034600 Sobic007G191100 Sobic007G191100 Sobic001G469400--Sobic007G191100 Sobic001G469400--Sobic007G094801 Sobic001G469400--Sobic008G136200 Sobic008G068800 Sobic008G068800 Sobic001G469400--Sobic008G068800 Sobic008G117200 Sobic008G117200 Sobic001G469400--Sobic008G117200 Sobic001G469400--Sobic003G144400 Sobic010G151900 Sobic010G151900 Sobic001G274700--Sobic010G151900 Sobic001G267900 Sobic001G267900 Sobic001G274700--Sobic001G267900 Sobic007G132400 Sobic007G132400 Sobic001G274700--Sobic007G132400 Sobic005G195800 Sobic005G195800 Sobic001G274700--Sobic005G195800 Sobic001G274700--Sobic009G045700 Sobic001G298600 Sobic001G298600 Sobic001G274700--Sobic001G298600 Sobic008G011100 Sobic008G011100 Sobic001G274700--Sobic008G011100 Sobic010G056000 Sobic010G056000 Sobic001G274700--Sobic010G056000 Sobic001G124000 Sobic001G124000 Sobic001G274700--Sobic001G124000 Sobic003G044900 Sobic003G044900 Sobic009G214600--Sobic003G044900 Sobic009G214600--Sobic007G094801 SobicK016900 SobicK016900 Sobic009G214600--SobicK016900 Sobic004G016500 Sobic004G016500 Sobic009G214600--Sobic004G016500 Sobic004G240900 Sobic004G240900 Sobic009G214600--Sobic004G240900 Sobic006G133600 Sobic006G133600 Sobic009G214600--Sobic006G133600 Sobic006G213100 Sobic006G213100 Sobic009G214600--Sobic006G213100 Sobic002G150766 Sobic002G150766 Sobic009G214600--Sobic002G150766 Sobic001G046600 Sobic001G046600 Sobic009G214600--Sobic001G046600 Sobic003G045400 Sobic003G045400 Sobic006G038400--Sobic003G045400 Sobic009G232700 Sobic009G232700 Sobic006G038400--Sobic009G232700 Sobic009G140700 Sobic009G140700 Sobic006G038400--Sobic009G140700 Sobic004G150400 Sobic004G150400 Sobic006G038400--Sobic004G150400 Sobic004G305600 Sobic004G305600 Sobic006G038400--Sobic004G305600 Sobic009G114800 Sobic009G114800 Sobic006G038400--Sobic009G114800 Sobic008G062000 Sobic008G062000 Sobic006G038400--Sobic008G062000 Sobic007G079700 Sobic007G079700 Sobic006G038400--Sobic007G079700 Sobic001G512600 Sobic001G512600 Sobic006G038400--Sobic001G512600 Sobic002G376800 Sobic002G376800 Sobic006G204200--Sobic002G376800 Sobic003G057800 Sobic003G057800 Sobic006G204200--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic006G204200--Sobic001G479500 Sobic006G204200--Sobic004G016500 Sobic004G315800 Sobic004G315800 Sobic006G204200--Sobic004G315800 Sobic002G330400 Sobic002G330400 Sobic006G204200--Sobic002G330400 Sobic008G161401 Sobic008G161401 Sobic006G204200--Sobic008G161401 Sobic004G020401 Sobic004G020401 Sobic006G204200--Sobic004G020401 Sobic010G248200 Sobic010G248200 Sobic006G204200--Sobic010G248200 Sobic010G074500 Sobic010G074500 Sobic007G094801--Sobic010G074500 Sobic007G094801--Sobic010G263800 Sobic007G011400 Sobic007G011400 Sobic007G094801--Sobic007G011400 Sobic007G094801--Sobic008G034600 Sobic006G129700 Sobic006G129700 Sobic007G094801--Sobic006G129700 Sobic003G315332 Sobic003G315332 Sobic007G094801--Sobic003G315332 Sobic007G094801--Sobic007G205800 Sobic007G094801--Sobic007G191100 Sobic004G143700 Sobic004G143700 Sobic007G094801--Sobic004G143700 Sobic004G074200 Sobic004G074200 Sobic009G114600--Sobic004G074200 Sobic010G153532 Sobic010G153532 Sobic009G114600--Sobic010G153532 Sobic003G060400 Sobic003G060400 Sobic009G114600--Sobic003G060400 Sobic010G242300 Sobic010G242300 Sobic009G114600--Sobic010G242300 Sobic009G114600--Sobic003G144400 Sobic002G103500 Sobic002G103500 Sobic009G114600--Sobic002G103500 Sobic007G017400 Sobic007G017400 Sobic009G114600--Sobic007G017400 Sobic001G056300 Sobic001G056300 Sobic009G114600--Sobic001G056300 Sobic009G114600--Sobic006G204200
Octagon: transcription factors


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