Gene annotation
Transcriptome id Sobic.003G328700.2,Sobic.003G328700.1
Synonym Sb03g037480, NRPD5, NRPB5, RPB5A, ATRPABC24.3
Functional annotation DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
UniProt A0A1B6Q6M6 , A0A1B6Q6N1
Pfam PF03871 PF01191 PF01191 PF03871
Panther DB PTHR10535
NCBI CDD KOG3218; RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)
KEGG Orthology K03013; RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding GO:0005634nucleus GO:0006351transcription, DNA-templated GO:0005634nucleus GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G22320 : Eukaryotic rpb5 RNA polymerase subunit family protein
RAP-DB (Rice) LOC_Os01g59140.1 : DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
MaizeGDB (Corn) Zm00025a039826
Brachypodium KQK10218 , KQK10217
Barley HORVU2Hr1G084300.3 , HORVU2Hr1G084300.2 , HORVU2Hr1G084300.1 , HORVU2Hr1G084300.7 , HORVU2Hr1G084300.6 , HORVU3Hr1G078930.1
Wheat TraesCS2A02G346200 , TraesCS3B02G363400 , TraesCS2D02G344900 , TraesCS2B02G364700 , TraesCS2A02G346300 , TraesCS2B02G364600
Populus -


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cDNA sequences
Sobic.003G328700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G114800 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
2 Sobic.006G255000 TLD family protein, putative, expressed -
3 Sobic.001G464100 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
4 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
5 Sobic.010G043600 IQ calmodulin-binding motif domain containing protein, expressed -
6 Sobic.001G372000 OsFBT5 - F-box and tubby domain containing protein, expressed -
7 Sobic.001G291100 tetraspanin family protein, putative, expressed -
8 Sobic.008G096100 expressed protein -
9 Sobic.001G096300 deoxyhypusine synthase, putative, expressed K00809: DHPS, deoxyhypusine synthase
10 Sobic.003G116700 hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.004G065200 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
12 Sobic.003G144400 homeobox protein knotted-1-like 6, putative, expressed -
13 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
14 Sobic.001G467000 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
15 Sobic.001G307900 LYR motif containing protein, putative, expressed K18167: succinate dehydrogenase assembly factor 1
16 Sobic.001G043601 - -
17 Sobic.001G123000 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
18 Sobic.010G051300 hydrolase, alpha/beta fold family domain containing protein, expressed -
19 Sobic.003G154700 stripe rust resistance protein Yr10, putative, expressed -
20 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C


Gene co-expression network
sample Sobic003G328700 Sobic003G328700 Sobic009G114800 Sobic009G114800 Sobic003G328700--Sobic009G114800 Sobic006G255000 Sobic006G255000 Sobic003G328700--Sobic006G255000 Sobic001G464100 Sobic001G464100 Sobic003G328700--Sobic001G464100 Sobic001G263000 Sobic001G263000 Sobic003G328700--Sobic001G263000 Sobic010G043600 Sobic010G043600 Sobic003G328700--Sobic010G043600 Sobic001G372000 Sobic001G372000 Sobic003G328700--Sobic001G372000 Sobic001G291100 Sobic001G291100 Sobic003G328700--Sobic001G291100 Sobic008G096100 Sobic008G096100 Sobic003G328700--Sobic008G096100 Sobic001G096300 Sobic001G096300 Sobic003G328700--Sobic001G096300 Sobic007G079700 Sobic007G079700 Sobic009G114800--Sobic007G079700 Sobic009G114800--Sobic001G291100 Sobic004G253000 Sobic004G253000 Sobic009G114800--Sobic004G253000 Sobic003G250500 Sobic003G250500 Sobic009G114800--Sobic003G250500 Sobic009G157200 Sobic009G157200 Sobic009G114800--Sobic009G157200 Sobic006G038400 Sobic006G038400 Sobic009G114800--Sobic006G038400 Sobic004G301900 Sobic004G301900 Sobic009G114800--Sobic004G301900 Sobic003G116700 Sobic003G116700 Sobic009G114800--Sobic003G116700 Sobic004G119000 Sobic004G119000 Sobic009G114800--Sobic004G119000 Sobic004G030100 Sobic004G030100 Sobic006G255000--Sobic004G030100 Sobic010G051300 Sobic010G051300 Sobic006G255000--Sobic010G051300 Sobic006G255000--Sobic003G328700 Sobic006G255000--Sobic001G464100 Sobic004G065200 Sobic004G065200 Sobic006G255000--Sobic004G065200 Sobic001G394600 Sobic001G394600 Sobic006G255000--Sobic001G394600 Sobic006G255000--Sobic001G263000 Sobic010G172500 Sobic010G172500 Sobic006G255000--Sobic010G172500 Sobic006G244700 Sobic006G244700 Sobic006G255000--Sobic006G244700 Sobic001G467000 Sobic001G467000 Sobic001G464100--Sobic001G467000 Sobic001G371200 Sobic001G371200 Sobic001G464100--Sobic001G371200 Sobic003G154700 Sobic003G154700 Sobic001G464100--Sobic003G154700 Sobic001G464100--Sobic001G291100 Sobic001G119300 Sobic001G119300 Sobic001G464100--Sobic001G119300 Sobic002G313500 Sobic002G313500 Sobic001G464100--Sobic002G313500 Sobic001G281600 Sobic001G281600 Sobic001G464100--Sobic001G281600 Sobic003G045400 Sobic003G045400 Sobic001G464100--Sobic003G045400 Sobic010G249300 Sobic010G249300 Sobic001G464100--Sobic010G249300 Sobic009G004600 Sobic009G004600 Sobic001G263000--Sobic009G004600 Sobic001G263000--Sobic006G244700 Sobic009G033900 Sobic009G033900 Sobic001G263000--Sobic009G033900 Sobic002G209400 Sobic002G209400 Sobic001G263000--Sobic002G209400 Sobic002G268400 Sobic002G268400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic004G074300 Sobic004G074300 Sobic001G263000--Sobic004G074300 Sobic004G356900 Sobic004G356900 Sobic001G263000--Sobic004G356900 Sobic010G057900 Sobic010G057900 Sobic001G263000--Sobic010G057900 Sobic010G043600--Sobic001G372000 Sobic010G043600--Sobic001G467000 Sobic002G301500 Sobic002G301500 Sobic010G043600--Sobic002G301500 Sobic010G043600--Sobic010G249300 Sobic007G203500 Sobic007G203500 Sobic010G043600--Sobic007G203500 Sobic001G389800 Sobic001G389800 Sobic010G043600--Sobic001G389800 Sobic010G043600--Sobic001G464100 Sobic010G043600--Sobic001G291100 Sobic002G317300 Sobic002G317300 Sobic010G043600--Sobic002G317300 Sobic001G372000--Sobic001G467000 Sobic004G150400 Sobic004G150400 Sobic001G372000--Sobic004G150400 Sobic010G145900 Sobic010G145900 Sobic001G372000--Sobic010G145900 Sobic006G209500 Sobic006G209500 Sobic001G372000--Sobic006G209500 Sobic001G512600 Sobic001G512600 Sobic001G372000--Sobic001G512600 Sobic002G132300 Sobic002G132300 Sobic001G372000--Sobic002G132300 Sobic001G372000--Sobic001G291100 Sobic001G478300 Sobic001G478300 Sobic001G372000--Sobic001G478300 Sobic003G305400 Sobic003G305400 Sobic001G372000--Sobic003G305400 Sobic001G291100--Sobic009G157200 Sobic001G291100--Sobic001G281600 Sobic001G291100--Sobic004G119000 Sobic010G056200 Sobic010G056200 Sobic001G291100--Sobic010G056200 Sobic001G291100--Sobic001G119300 Sobic001G291100--Sobic004G150400 Sobic001G107500 Sobic001G107500 Sobic001G291100--Sobic001G107500 Sobic006G088100 Sobic006G088100 Sobic001G291100--Sobic006G088100 Sobic004G083700 Sobic004G083700 Sobic001G291100--Sobic004G083700 Sobic008G041700 Sobic008G041700 Sobic008G096100--Sobic008G041700 Sobic008G153600 Sobic008G153600 Sobic008G096100--Sobic008G153600 Sobic004G198000 Sobic004G198000 Sobic008G096100--Sobic004G198000 Sobic008G136200 Sobic008G136200 Sobic008G096100--Sobic008G136200 Sobic007G191100 Sobic007G191100 Sobic008G096100--Sobic007G191100 Sobic008G096100--Sobic001G464100 Sobic007G205800 Sobic007G205800 Sobic008G096100--Sobic007G205800 SobicK016900 SobicK016900 Sobic008G096100--SobicK016900 Sobic008G096100--Sobic004G150400 Sobic003G196900 Sobic003G196900 Sobic001G096300--Sobic003G196900 Sobic001G096300--Sobic010G172500 Sobic006G280600 Sobic006G280600 Sobic001G096300--Sobic006G280600 Sobic001G096300--Sobic001G263000 Sobic007G171950 Sobic007G171950 Sobic001G096300--Sobic007G171950 Sobic001G307900 Sobic001G307900 Sobic001G096300--Sobic001G307900 Sobic001G067300 Sobic001G067300 Sobic001G096300--Sobic001G067300 Sobic001G096300--Sobic001G464100 Sobic007G095500 Sobic007G095500 Sobic001G096300--Sobic007G095500
Octagon: transcription factors


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