Gene annotation
Transcriptome id Sobic.004G065200.1
Synonym Sb04g005450
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5XWV1
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF356
NCBI CDD KOG0699; Serine/threonine protein phosphatase
KEGG Orthology K17499; PPM1G, protein phosphatase 1G
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT4G31860 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os02g08364.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a019219 , Zm00025a051622 , Zm00025a051620
Brachypodium KQK16856 , PNT66026 , KQJ93651 , KQJ93650 , KQJ91439 , KQJ91438
Barley HORVU6Hr1G029160.6 , HORVU6Hr1G029160.4 , HORVU6Hr1G029160.5 , HORVU6Hr1G029160.8 , HORVU6Hr1G029160.9 , HORVU6Hr1G029160.2 , HORVU6Hr1G029160.3 , HORVU6Hr1G029160.1 , HORVU6Hr1G029160.7 , HORVU7Hr1G113110.1 , HORVU7Hr1G113110.2 , HORVU7Hr1G113110.3 , HORVU7Hr1G113110.4 , HORVU7Hr1G113110.5 , HORVU7Hr1G113110.6 , HORVU7Hr1G113110.7 , HORVU7Hr1G113110.8 , HORVU7Hr1G113110.9 , HORVU7Hr1G113110.12 , HORVU7Hr1G113110.13 , HORVU7Hr1G113110.10 , HORVU7Hr1G113110.11 , HORVU7Hr1G113110.16 , HORVU7Hr1G113110.17 , HORVU7Hr1G113110.14 , HORVU7Hr1G113110.15
Wheat TraesCS6D02G137200 , TraesCS6D02G137200 , TraesCS6D02G137200 , TraesCS7A02G504800 , TraesCS7B02G411900 , TraesCS6B02G176200 , TraesCS6B02G176200 , TraesCS6B02G176200 , TraesCS6B02G176200 , TraesCS7D02G492000 , TraesCS6A02G147900 , TraesCS6A02G147900 , TraesCS6A02G147900 , TraesCS6A02G147900 , TraesCS6A02G147900
Populus PNT25920 , PNT25921 , PNT37398 , PNT37395 , PNT37397


JBrowse

Open New Page


cDNA sequences
Sobic.004G065200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G123000 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
2 Sobic.006G052500 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed K00164: OGDH, 2-oxoglutarate dehydrogenase E1 component
3 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
4 Sobic.001G394600 expressed protein -
5 Sobic.007G203500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
6 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
7 Sobic.007G134600 agenet domain containing protein, expressed -
8 Sobic.006G114500 per1-like family protein, putative, expressed -
9 Sobic.001G464100 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
10 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
11 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
12 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
13 Sobic.003G370200 ion channel DMI1, chloroplast precursor, putative, expressed -
14 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
15 Sobic.010G051300 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.002G009600 AMP-binding domain containing protein, expressed -
17 Sobic.003G008500 VHS and GAT domain containing protein, expressed -
18 Sobic.006G255000 TLD family protein, putative, expressed -
19 Sobic.001G275900 calcium-transporting ATPase, plasma membrane-type, putative, expressed -
20 Sobic.006G028250 - -


Gene co-expression network
sample Sobic004G065200 Sobic004G065200 Sobic001G123000 Sobic001G123000 Sobic004G065200--Sobic001G123000 Sobic006G052500 Sobic006G052500 Sobic004G065200--Sobic006G052500 Sobic003G401000 Sobic003G401000 Sobic004G065200--Sobic003G401000 Sobic001G394600 Sobic001G394600 Sobic004G065200--Sobic001G394600 Sobic007G203500 Sobic007G203500 Sobic004G065200--Sobic007G203500 Sobic002G361300 Sobic002G361300 Sobic004G065200--Sobic002G361300 Sobic007G134600 Sobic007G134600 Sobic004G065200--Sobic007G134600 Sobic006G114500 Sobic006G114500 Sobic004G065200--Sobic006G114500 Sobic001G464100 Sobic001G464100 Sobic004G065200--Sobic001G464100 Sobic007G007000 Sobic007G007000 Sobic001G123000--Sobic007G007000 Sobic009G259400 Sobic009G259400 Sobic001G123000--Sobic009G259400 Sobic003G344900 Sobic003G344900 Sobic001G123000--Sobic003G344900 Sobic001G120300 Sobic001G120300 Sobic001G123000--Sobic001G120300 Sobic001G098200 Sobic001G098200 Sobic001G123000--Sobic001G098200 Sobic010G090900 Sobic010G090900 Sobic001G123000--Sobic010G090900 Sobic001G123000--Sobic006G114500 Sobic005G091600 Sobic005G091600 Sobic001G123000--Sobic005G091600 Sobic007G177000 Sobic007G177000 Sobic001G123000--Sobic007G177000 Sobic002G310200 Sobic002G310200 Sobic006G052500--Sobic002G310200 Sobic009G219000 Sobic009G219000 Sobic006G052500--Sobic009G219000 Sobic009G042700 Sobic009G042700 Sobic006G052500--Sobic009G042700 Sobic002G067600 Sobic002G067600 Sobic006G052500--Sobic002G067600 Sobic006G052500--Sobic007G203500 Sobic006G052800 Sobic006G052800 Sobic006G052500--Sobic006G052800 Sobic010G053800 Sobic010G053800 Sobic006G052500--Sobic010G053800 Sobic006G052500--Sobic007G134600 Sobic010G056000 Sobic010G056000 Sobic006G052500--Sobic010G056000 Sobic002G158700 Sobic002G158700 Sobic003G401000--Sobic002G158700 Sobic003G187400 Sobic003G187400 Sobic003G401000--Sobic003G187400 Sobic002G157300 Sobic002G157300 Sobic003G401000--Sobic002G157300 Sobic009G257800 Sobic009G257800 Sobic003G401000--Sobic009G257800 Sobic001G155000 Sobic001G155000 Sobic003G401000--Sobic001G155000 Sobic009G040700 Sobic009G040700 Sobic003G401000--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G401000--Sobic001G094000 Sobic006G028200 Sobic006G028200 Sobic003G401000--Sobic006G028200 Sobic003G008500 Sobic003G008500 Sobic003G401000--Sobic003G008500 Sobic001G394600--Sobic002G361300 Sobic001G394600--Sobic001G120300 Sobic001G394600--Sobic006G114500 Sobic004G339100 Sobic004G339100 Sobic001G394600--Sobic004G339100 Sobic010G205800 Sobic010G205800 Sobic001G394600--Sobic010G205800 Sobic001G201400 Sobic001G201400 Sobic001G394600--Sobic001G201400 Sobic007G024700 Sobic007G024700 Sobic001G394600--Sobic007G024700 Sobic001G000200 Sobic001G000200 Sobic001G394600--Sobic001G000200 Sobic004G158700 Sobic004G158700 Sobic001G394600--Sobic004G158700 Sobic010G017800 Sobic010G017800 Sobic007G203500--Sobic010G017800 Sobic003G126600 Sobic003G126600 Sobic007G203500--Sobic003G126600 Sobic007G203500--Sobic003G401000 Sobic007G203500--Sobic006G052500 Sobic001G539016 Sobic001G539016 Sobic007G203500--Sobic001G539016 Sobic003G313400 Sobic003G313400 Sobic007G203500--Sobic003G313400 Sobic007G203500--Sobic009G257800 Sobic009G229600 Sobic009G229600 Sobic007G203500--Sobic009G229600 Sobic010G106900 Sobic010G106900 Sobic007G203500--Sobic010G106900 Sobic002G361300--Sobic001G394600 Sobic009G257200 Sobic009G257200 Sobic002G361300--Sobic009G257200 Sobic002G361300--Sobic010G205800 Sobic001G127000 Sobic001G127000 Sobic002G361300--Sobic001G127000 Sobic007G120500 Sobic007G120500 Sobic002G361300--Sobic007G120500 Sobic009G224000 Sobic009G224000 Sobic002G361300--Sobic009G224000 Sobic001G114000 Sobic001G114000 Sobic002G361300--Sobic001G114000 Sobic004G039600 Sobic004G039600 Sobic002G361300--Sobic004G039600 Sobic004G358600 Sobic004G358600 Sobic002G361300--Sobic004G358600 Sobic007G134600--Sobic002G310200 Sobic009G215800 Sobic009G215800 Sobic007G134600--Sobic009G215800 Sobic006G237400 Sobic006G237400 Sobic007G134600--Sobic006G237400 Sobic007G134600--Sobic010G056000 Sobic001G351700 Sobic001G351700 Sobic007G134600--Sobic001G351700 Sobic001G222500 Sobic001G222500 Sobic007G134600--Sobic001G222500 Sobic007G134600--Sobic002G157300 Sobic006G273200 Sobic006G273200 Sobic007G134600--Sobic006G273200 Sobic008G067600 Sobic008G067600 Sobic007G134600--Sobic008G067600 Sobic001G142100 Sobic001G142100 Sobic006G114500--Sobic001G142100 Sobic002G313500 Sobic002G313500 Sobic006G114500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic006G114500--Sobic004G350100 Sobic004G021100 Sobic004G021100 Sobic006G114500--Sobic004G021100 Sobic006G114500--Sobic004G339100 Sobic004G205600 Sobic004G205600 Sobic006G114500--Sobic004G205600 Sobic006G114500--Sobic001G201400 Sobic001G466700 Sobic001G466700 Sobic006G114500--Sobic001G466700 Sobic006G114500--Sobic009G257800 Sobic001G467000 Sobic001G467000 Sobic001G464100--Sobic001G467000 Sobic001G371200 Sobic001G371200 Sobic001G464100--Sobic001G371200 Sobic003G154700 Sobic003G154700 Sobic001G464100--Sobic003G154700 Sobic001G291100 Sobic001G291100 Sobic001G464100--Sobic001G291100 Sobic001G119300 Sobic001G119300 Sobic001G464100--Sobic001G119300 Sobic001G464100--Sobic002G313500 Sobic001G281600 Sobic001G281600 Sobic001G464100--Sobic001G281600 Sobic003G045400 Sobic003G045400 Sobic001G464100--Sobic003G045400 Sobic010G249300 Sobic010G249300 Sobic001G464100--Sobic010G249300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.