Gene annotation
Transcriptome id Sobic.002G009600.1
Synonym Sb02g001045
Functional annotation AMP-binding domain containing protein, expressed
UniProt C5X7A2
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF205
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G63380 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os07g17970.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044888
Brachypodium KQJ88613 , KQJ88614 , KQK08968
Barley HORVU3Hr1G089000.2 , HORVU3Hr1G089000.1 , HORVU3Hr1G089000.5
Wheat TraesCS3A02G394200 , TraesCS3A02G394200 , TraesCS3D02G388100 , TraesCS3D02G388000 , TraesCS3D02G388000 , TraesCS3B02G426300 , TraesCS3A02G394300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G359400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
2 Sobic.009G183200 Ca ATPase 6(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
3 Sobic.010G264100 expressed protein -
4 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
5 Sobic.005G007800 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
6 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
7 Sobic.001G168400 similar to Serine/threonine-protein kinase SAPK10(PubMedID : 29862293)@CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
8 Sobic.001G394600 expressed protein -
9 Sobic.002G303000 disease resistant protein, identical, putative, expressed -
10 Sobic.003G370200 ion channel DMI1, chloroplast precursor, putative, expressed -
11 Sobic.009G170400 ribonuclease P family protein("PubMedID : 26759170,PubMedID : 24597475")@ribonuclease P family protein, putative, expressed K03538: POP4, ribonuclease P protein subunit POP4
12 Sobic.007G190333 - -
13 Sobic.001G000200 TBC domain containing protein, expressed -
14 Sobic.004G065200 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
15 Sobic.010G084000 OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed -
16 Sobic.001G253700 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
17 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
18 Sobic.001G306000 protein kinase, putative, expressed -
19 Sobic.009G083900 C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
20 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant


Gene co-expression network
sample Sobic002G009600 Sobic002G009600 Sobic001G359400 Sobic001G359400 Sobic002G009600--Sobic001G359400 Sobic009G183200 Sobic009G183200 Sobic002G009600--Sobic009G183200 Sobic010G264100 Sobic010G264100 Sobic002G009600--Sobic010G264100 Sobic001G120300 Sobic001G120300 Sobic002G009600--Sobic001G120300 Sobic005G007800 Sobic005G007800 Sobic002G009600--Sobic005G007800 Sobic009G235900 Sobic009G235900 Sobic002G009600--Sobic009G235900 Sobic001G168400 Sobic001G168400 Sobic002G009600--Sobic001G168400 Sobic001G394600 Sobic001G394600 Sobic002G009600--Sobic001G394600 Sobic002G303000 Sobic002G303000 Sobic002G009600--Sobic002G303000 Sobic001G359400--Sobic009G235900 Sobic010G078100 Sobic010G078100 Sobic001G359400--Sobic010G078100 Sobic001G359400--Sobic005G007800 Sobic010G042900 Sobic010G042900 Sobic001G359400--Sobic010G042900 Sobic001G359400--Sobic002G303000 Sobic001G359400--Sobic002G009600 Sobic001G347600 Sobic001G347600 Sobic001G359400--Sobic001G347600 Sobic001G373100 Sobic001G373100 Sobic001G359400--Sobic001G373100 Sobic008G160700 Sobic008G160700 Sobic001G359400--Sobic008G160700 Sobic001G306000 Sobic001G306000 Sobic009G183200--Sobic001G306000 Sobic005G028400 Sobic005G028400 Sobic009G183200--Sobic005G028400 Sobic001G486300 Sobic001G486300 Sobic009G183200--Sobic001G486300 Sobic010G026400 Sobic010G026400 Sobic009G183200--Sobic010G026400 Sobic007G205800 Sobic007G205800 Sobic009G183200--Sobic007G205800 Sobic007G035600 Sobic007G035600 Sobic009G183200--Sobic007G035600 Sobic001G451000 Sobic001G451000 Sobic009G183200--Sobic001G451000 Sobic001G446900 Sobic001G446900 Sobic009G183200--Sobic001G446900 Sobic007G145200 Sobic007G145200 Sobic009G183200--Sobic007G145200 Sobic008G041700 Sobic008G041700 Sobic010G264100--Sobic008G041700 Sobic002G300400 Sobic002G300400 Sobic010G264100--Sobic002G300400 Sobic003G268300 Sobic003G268300 Sobic010G264100--Sobic003G268300 Sobic001G413500 Sobic001G413500 Sobic010G264100--Sobic001G413500 Sobic001G094000 Sobic001G094000 Sobic010G264100--Sobic001G094000 Sobic010G264100--Sobic001G168400 Sobic009G134500 Sobic009G134500 Sobic010G264100--Sobic009G134500 Sobic005G149500 Sobic005G149500 Sobic010G264100--Sobic005G149500 Sobic001G477800 Sobic001G477800 Sobic010G264100--Sobic001G477800 Sobic003G354400 Sobic003G354400 Sobic001G120300--Sobic003G354400 Sobic001G120300--Sobic001G394600 Sobic004G127700 Sobic004G127700 Sobic001G120300--Sobic004G127700 Sobic010G084000 Sobic010G084000 Sobic001G120300--Sobic010G084000 Sobic001G123000 Sobic001G123000 Sobic001G120300--Sobic001G123000 Sobic010G205800 Sobic010G205800 Sobic001G120300--Sobic010G205800 Sobic001G000200 Sobic001G000200 Sobic001G120300--Sobic001G000200 Sobic004G183600 Sobic004G183600 Sobic001G120300--Sobic004G183600 Sobic002G092300 Sobic002G092300 Sobic001G120300--Sobic002G092300 Sobic005G007800--Sobic009G235900 Sobic005G007800--Sobic010G042900 Sobic005G007800--Sobic002G303000 Sobic003G145900 Sobic003G145900 Sobic005G007800--Sobic003G145900 Sobic005G007800--Sobic001G359400 Sobic009G040700 Sobic009G040700 Sobic005G007800--Sobic009G040700 Sobic004G143700 Sobic004G143700 Sobic005G007800--Sobic004G143700 Sobic005G007800--Sobic010G078100 Sobic001G424700 Sobic001G424700 Sobic005G007800--Sobic001G424700 Sobic001G194900 Sobic001G194900 Sobic009G235900--Sobic001G194900 Sobic002G188500 Sobic002G188500 Sobic009G235900--Sobic002G188500 Sobic009G235900--Sobic008G160700 Sobic009G235900--Sobic001G359400 Sobic009G235900--Sobic005G007800 Sobic009G235900--Sobic010G042900 Sobic003G005800 Sobic003G005800 Sobic009G235900--Sobic003G005800 Sobic009G235900--Sobic003G145900 Sobic009G235900--Sobic001G347600 Sobic001G168400--Sobic010G264100 Sobic001G168400--Sobic008G041700 Sobic007G011400 Sobic007G011400 Sobic001G168400--Sobic007G011400 Sobic001G168400--Sobic009G040700 Sobic001G168400--Sobic002G300400 Sobic003G187400 Sobic003G187400 Sobic001G168400--Sobic003G187400 Sobic001G168400--Sobic001G094000 Sobic001G168400--Sobic001G486300 Sobic001G168400--Sobic005G149500 Sobic002G361300 Sobic002G361300 Sobic001G394600--Sobic002G361300 Sobic001G394600--Sobic001G120300 Sobic006G114500 Sobic006G114500 Sobic001G394600--Sobic006G114500 Sobic004G339100 Sobic004G339100 Sobic001G394600--Sobic004G339100 Sobic001G394600--Sobic010G205800 Sobic001G201400 Sobic001G201400 Sobic001G394600--Sobic001G201400 Sobic007G024700 Sobic007G024700 Sobic001G394600--Sobic007G024700 Sobic001G394600--Sobic001G000200 Sobic004G158700 Sobic004G158700 Sobic001G394600--Sobic004G158700 Sobic002G303000--Sobic010G078100 Sobic009G121100 Sobic009G121100 Sobic002G303000--Sobic009G121100 Sobic002G303000--Sobic008G160700 Sobic003G407300 Sobic003G407300 Sobic002G303000--Sobic003G407300 Sobic002G303000--Sobic009G040700 Sobic002G303000--Sobic005G007800 Sobic004G196700 Sobic004G196700 Sobic002G303000--Sobic004G196700 Sobic002G303000--Sobic009G235900 Sobic008G024600 Sobic008G024600 Sobic002G303000--Sobic008G024600
Octagon: transcription factors


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