Gene annotation
Transcriptome id Sobic.005G007800.1
Synonym Sb05g000740
Functional annotation F-box/LRR-repeat protein 3, putative, expressed
UniProt C5Y321
Pfam PF13516 PF00560
Panther DB PTHR24006 PTHR24006:SF512
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box KOG4341F-box protein containing LRR
KEGG Orthology K10268; F-box and leucine-rich repeat protein 2/20
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G01720 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os11g01780.1 : F-box/LRR-repeat protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a028942 , Zm00025a013203
Brachypodium PNT65590
Barley HORVU5Hr1G047420.2 , HORVU5Hr1G047420.3
Wheat TraesCS5B02G149400 , TraesCS5D02G155900 , TraesCS5D02G155900 , TraesCS5D02G155900 , TraesCS5A02G150800 , TraesCS5A02G150800
Populus -


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cDNA sequences
Sobic.005G007800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
2 Sobic.010G042900 expressed protein -
3 Sobic.002G303000 disease resistant protein, identical, putative, expressed -
4 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
5 Sobic.001G359400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
6 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
7 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
8 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
9 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
10 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
11 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
12 Sobic.001G347600 paramyosin, putative, expressed -
13 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
14 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
15 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
16 Sobic.003G093600 methyltransferase, putative, expressed -
17 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
18 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
19 Sobic.006G114500 per1-like family protein, putative, expressed -
20 Sobic.004G283000 nucleic acid binding protein, putative, expressed -


Gene co-expression network
sample Sobic005G007800 Sobic005G007800 Sobic009G235900 Sobic009G235900 Sobic005G007800--Sobic009G235900 Sobic010G042900 Sobic010G042900 Sobic005G007800--Sobic010G042900 Sobic002G303000 Sobic002G303000 Sobic005G007800--Sobic002G303000 Sobic003G145900 Sobic003G145900 Sobic005G007800--Sobic003G145900 Sobic001G359400 Sobic001G359400 Sobic005G007800--Sobic001G359400 Sobic009G040700 Sobic009G040700 Sobic005G007800--Sobic009G040700 Sobic004G143700 Sobic004G143700 Sobic005G007800--Sobic004G143700 Sobic010G078100 Sobic010G078100 Sobic005G007800--Sobic010G078100 Sobic001G424700 Sobic001G424700 Sobic005G007800--Sobic001G424700 Sobic001G194900 Sobic001G194900 Sobic009G235900--Sobic001G194900 Sobic002G188500 Sobic002G188500 Sobic009G235900--Sobic002G188500 Sobic008G160700 Sobic008G160700 Sobic009G235900--Sobic008G160700 Sobic009G235900--Sobic001G359400 Sobic009G235900--Sobic005G007800 Sobic009G235900--Sobic010G042900 Sobic003G005800 Sobic003G005800 Sobic009G235900--Sobic003G005800 Sobic009G235900--Sobic003G145900 Sobic001G347600 Sobic001G347600 Sobic009G235900--Sobic001G347600 Sobic003G093600 Sobic003G093600 Sobic010G042900--Sobic003G093600 Sobic007G023700 Sobic007G023700 Sobic010G042900--Sobic007G023700 Sobic010G042900--Sobic001G347600 Sobic010G042900--Sobic005G007800 Sobic004G034400 Sobic004G034400 Sobic010G042900--Sobic004G034400 Sobic001G028700 Sobic001G028700 Sobic010G042900--Sobic001G028700 Sobic010G042900--Sobic009G235900 Sobic009G117400 Sobic009G117400 Sobic010G042900--Sobic009G117400 Sobic006G129700 Sobic006G129700 Sobic010G042900--Sobic006G129700 Sobic002G303000--Sobic010G078100 Sobic009G121100 Sobic009G121100 Sobic002G303000--Sobic009G121100 Sobic002G303000--Sobic008G160700 Sobic003G407300 Sobic003G407300 Sobic002G303000--Sobic003G407300 Sobic002G303000--Sobic009G040700 Sobic002G303000--Sobic005G007800 Sobic004G196700 Sobic004G196700 Sobic002G303000--Sobic004G196700 Sobic002G303000--Sobic009G235900 Sobic008G024600 Sobic008G024600 Sobic002G303000--Sobic008G024600 Sobic003G145900--Sobic009G235900 Sobic003G145900--Sobic008G160700 Sobic003G145900--Sobic005G007800 Sobic004G330900 Sobic004G330900 Sobic003G145900--Sobic004G330900 Sobic001G221100 Sobic001G221100 Sobic003G145900--Sobic001G221100 Sobic003G145900--Sobic010G042900 Sobic003G145900--Sobic002G303000 Sobic006G114500 Sobic006G114500 Sobic003G145900--Sobic006G114500 Sobic004G037900 Sobic004G037900 Sobic003G145900--Sobic004G037900 Sobic001G359400--Sobic009G235900 Sobic001G359400--Sobic010G078100 Sobic001G359400--Sobic005G007800 Sobic001G359400--Sobic010G042900 Sobic001G359400--Sobic002G303000 Sobic002G009600 Sobic002G009600 Sobic001G359400--Sobic002G009600 Sobic001G359400--Sobic001G347600 Sobic001G373100 Sobic001G373100 Sobic001G359400--Sobic001G373100 Sobic001G359400--Sobic008G160700 Sobic001G094000 Sobic001G094000 Sobic009G040700--Sobic001G094000 Sobic003G187400 Sobic003G187400 Sobic009G040700--Sobic003G187400 Sobic005G149500 Sobic005G149500 Sobic009G040700--Sobic005G149500 Sobic007G011400 Sobic007G011400 Sobic009G040700--Sobic007G011400 Sobic002G157300 Sobic002G157300 Sobic009G040700--Sobic002G157300 Sobic001G477800 Sobic001G477800 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic009G040700--Sobic004G196700 Sobic008G078100 Sobic008G078100 Sobic009G040700--Sobic008G078100 Sobic007G073400 Sobic007G073400 Sobic004G143700--Sobic007G073400 Sobic004G143700--Sobic007G023700 Sobic004G212800 Sobic004G212800 Sobic004G143700--Sobic004G212800 Sobic002G283300 Sobic002G283300 Sobic004G143700--Sobic002G283300 Sobic010G248200 Sobic010G248200 Sobic004G143700--Sobic010G248200 Sobic001G024200 Sobic001G024200 Sobic004G143700--Sobic001G024200 Sobic004G143700--Sobic003G093600 Sobic001G439500 Sobic001G439500 Sobic004G143700--Sobic001G439500 Sobic001G543900 Sobic001G543900 Sobic004G143700--Sobic001G543900 Sobic010G078100--Sobic008G160700 Sobic010G078100--Sobic002G303000 Sobic010G078100--Sobic009G121100 Sobic006G214500 Sobic006G214500 Sobic010G078100--Sobic006G214500 Sobic009G027000 Sobic009G027000 Sobic010G078100--Sobic009G027000 Sobic010G078100--Sobic001G359400 Sobic010G078100--Sobic001G373100 Sobic006G122400 Sobic006G122400 Sobic010G078100--Sobic006G122400 Sobic004G295800 Sobic004G295800 Sobic010G078100--Sobic004G295800 Sobic007G078000 Sobic007G078000 Sobic001G424700--Sobic007G078000 Sobic003G333600 Sobic003G333600 Sobic001G424700--Sobic003G333600 Sobic001G424700--Sobic005G149500 Sobic001G424700--Sobic004G196700 Sobic001G424700--Sobic003G093600 Sobic009G087800 Sobic009G087800 Sobic001G424700--Sobic009G087800 Sobic010G260500 Sobic010G260500 Sobic001G424700--Sobic010G260500 Sobic007G205800 Sobic007G205800 Sobic001G424700--Sobic007G205800 Sobic004G205600 Sobic004G205600 Sobic001G424700--Sobic004G205600
Octagon: transcription factors


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