Gene annotation
Transcriptome id Sobic.009G183200.1
Synonym ACA4, Sb09g024300
Functional annotation Ca ATPase 6 (PubMedID : 22196357)
calcium-transporting ATPase, plasma membrane-type, putative, expressed
UniProt C5Z0B0
Pfam PF12515 PF00690 PF12710 PF00689 PF00122
Panther DB PTHR24093 PTHR24093:SF337
NCBI CDD -
KEGG Orthology K01537; P-type Ca2+ transporter type 2C
Gene Ontology GO:0005516; calmodulin binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT2G41560 : autoinhibited Ca(2+)-ATPase, isoform 4
RAP-DB (Rice) LOC_Os05g41580.1 : calcium-transporting ATPase, plasma membrane-type, putative, expressed
MaizeGDB (Corn) Zm00025a044099
Brachypodium KQK05611 , KQK05610
Barley HORVU1Hr1G067550.21 , HORVU1Hr1G067550.20 , HORVU1Hr1G067550.10 , HORVU1Hr1G067550.13 , HORVU1Hr1G067550.6 , HORVU1Hr1G067550.7 , HORVU1Hr1G067550.4 , HORVU1Hr1G067550.5 , HORVU1Hr1G067550.2 , HORVU1Hr1G067550.3 , HORVU1Hr1G067550.1 , HORVU1Hr1G067550.8 , HORVU1Hr1G067550.9 , HORVU1Hr1G067550.18 , HORVU1Hr1G067550.19 , HORVU1Hr1G067550.14 , HORVU1Hr1G067550.15 , HORVU1Hr1G067550.16 , HORVU1Hr1G067550.17 , HORVU1Hr1G067550.11 , HORVU1Hr1G067550.12
Wheat TraesCS1B02G324000 , TraesCS1A02G312300 , TraesCS1D02G312500 , TraesCS1D02G312500
Populus PNS22431 , PNS94311 , PNT27291 , PNT27292


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G306000 protein kinase, putative, expressed -
2 Sobic.005G028400 "Ca ATPase, IIB type"(PubMedID : 22196357)@Autoihibited Ca2+ - ATPase 11(PubMedID : 26320239)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
3 Sobic.001G486300 phosphatidylinositol transfer, putative, expressed -
4 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
5 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
6 Sobic.007G035600 MSP domain containing protein, putative, expressed -
7 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
8 Sobic.001G446900 arginyl-tRNA synthetase, putative, expressed -
9 Sobic.007G145200 serine esterase family protein, putative, expressed -
10 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
11 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
12 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
13 Sobic.003G333600 OsFBX29 - F-box domain containing protein, expressed -
14 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
15 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
16 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
17 Sobic.003G393300 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
18 Sobic.001G497300 protein kinase domain containing protein, expressed -
19 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
20 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit


Gene co-expression network
sample Sobic009G183200 Sobic009G183200 Sobic001G306000 Sobic001G306000 Sobic009G183200--Sobic001G306000 Sobic005G028400 Sobic005G028400 Sobic009G183200--Sobic005G028400 Sobic001G486300 Sobic001G486300 Sobic009G183200--Sobic001G486300 Sobic010G026400 Sobic010G026400 Sobic009G183200--Sobic010G026400 Sobic007G205800 Sobic007G205800 Sobic009G183200--Sobic007G205800 Sobic007G035600 Sobic007G035600 Sobic009G183200--Sobic007G035600 Sobic001G451000 Sobic001G451000 Sobic009G183200--Sobic001G451000 Sobic001G446900 Sobic001G446900 Sobic009G183200--Sobic001G446900 Sobic007G145200 Sobic007G145200 Sobic009G183200--Sobic007G145200 Sobic001G306000--Sobic009G183200 Sobic001G306000--Sobic001G446900 Sobic001G497300 Sobic001G497300 Sobic001G306000--Sobic001G497300 Sobic007G078000 Sobic007G078000 Sobic001G306000--Sobic007G078000 Sobic001G306000--Sobic007G205800 Sobic001G420200 Sobic001G420200 Sobic001G306000--Sobic001G420200 Sobic001G306000--Sobic001G486300 Sobic003G333600 Sobic003G333600 Sobic001G306000--Sobic003G333600 Sobic007G104800 Sobic007G104800 Sobic001G306000--Sobic007G104800 Sobic009G156000 Sobic009G156000 Sobic005G028400--Sobic009G156000 Sobic008G161401 Sobic008G161401 Sobic005G028400--Sobic008G161401 Sobic007G073400 Sobic007G073400 Sobic005G028400--Sobic007G073400 Sobic007G211000 Sobic007G211000 Sobic005G028400--Sobic007G211000 Sobic001G479500 Sobic001G479500 Sobic005G028400--Sobic001G479500 Sobic005G028400--Sobic007G205800 Sobic004G143700 Sobic004G143700 Sobic005G028400--Sobic004G143700 Sobic006G009400 Sobic006G009400 Sobic005G028400--Sobic006G009400 Sobic005G028400--Sobic009G183200 Sobic005G023900 Sobic005G023900 Sobic001G486300--Sobic005G023900 Sobic001G486300--Sobic001G420200 Sobic003G268300 Sobic003G268300 Sobic001G486300--Sobic003G268300 Sobic007G011400 Sobic007G011400 Sobic001G486300--Sobic007G011400 Sobic001G486300--Sobic001G497300 Sobic004G290800 Sobic004G290800 Sobic001G486300--Sobic004G290800 Sobic001G107500 Sobic001G107500 Sobic001G486300--Sobic001G107500 Sobic001G251700 Sobic001G251700 Sobic001G486300--Sobic001G251700 Sobic003G220200 Sobic003G220200 Sobic001G486300--Sobic003G220200 Sobic003G012500 Sobic003G012500 Sobic010G026400--Sobic003G012500 Sobic002G157300 Sobic002G157300 Sobic010G026400--Sobic002G157300 Sobic009G127900 Sobic009G127900 Sobic010G026400--Sobic009G127900 Sobic010G026400--Sobic006G009400 Sobic010G026400--Sobic007G011400 Sobic003G261300 Sobic003G261300 Sobic010G026400--Sobic003G261300 Sobic010G263800 Sobic010G263800 Sobic010G026400--Sobic010G263800 Sobic005G149500 Sobic005G149500 Sobic010G026400--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G026400--Sobic003G187400 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic007G205800--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic003G093600 Sobic003G093600 Sobic007G205800--Sobic003G093600 Sobic003G258400 Sobic003G258400 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic007G035600--Sobic007G205800 Sobic001G347600 Sobic001G347600 Sobic007G035600--Sobic001G347600 Sobic003G324000 Sobic003G324000 Sobic007G035600--Sobic003G324000 Sobic007G035600--Sobic003G093600 Sobic007G035600--Sobic004G143700 Sobic009G198900 Sobic009G198900 Sobic007G035600--Sobic009G198900 Sobic001G368400 Sobic001G368400 Sobic007G035600--Sobic001G368400 Sobic007G035600--Sobic009G087800 SobicK016900 SobicK016900 Sobic007G035600--SobicK016900 Sobic005G167300 Sobic005G167300 Sobic001G451000--Sobic005G167300 Sobic002G115801 Sobic002G115801 Sobic001G451000--Sobic002G115801 Sobic010G260500 Sobic010G260500 Sobic001G451000--Sobic010G260500 Sobic002G284200 Sobic002G284200 Sobic001G451000--Sobic002G284200 Sobic001G451000--Sobic003G333600 Sobic001G451000--Sobic007G078000 Sobic001G439500 Sobic001G439500 Sobic001G451000--Sobic001G439500 Sobic004G198000 Sobic004G198000 Sobic001G451000--Sobic004G198000 Sobic004G196700 Sobic004G196700 Sobic001G451000--Sobic004G196700 Sobic007G178700 Sobic007G178700 Sobic001G446900--Sobic007G178700 Sobic001G446900--Sobic009G127900 Sobic006G082600 Sobic006G082600 Sobic001G446900--Sobic006G082600 Sobic001G446900--Sobic004G290800 Sobic001G446900--Sobic003G268300 Sobic007G137900 Sobic007G137900 Sobic001G446900--Sobic007G137900 Sobic001G446900--Sobic010G026400 Sobic009G104201 Sobic009G104201 Sobic001G446900--Sobic009G104201 Sobic001G111900 Sobic001G111900 Sobic001G446900--Sobic001G111900 Sobic007G145200--Sobic003G220200 Sobic007G145200--Sobic010G026400 Sobic007G145200--Sobic006G082600 Sobic007G145200--Sobic001G451000 Sobic007G145200--Sobic009G127900 Sobic007G145200--Sobic001G446900 Sobic007G145200--Sobic002G157300 Sobic007G145200--Sobic004G290800 Sobic007G145200--Sobic001G486300
Octagon: transcription factors


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