Gene annotation
| Transcriptome id | Sobic.007G035600.1 |
|---|---|
| Synonym | Sb07g003060 |
| Functional annotation | MSP domain containing protein, putative, expressed |
| UniProt | C5YN28 |
| Pfam | PF00635 |
| Panther DB | PTHR10809 PTHR10809:SF48 |
| NCBI CDD | KOG0439; VAMP-associated protein involved in inositol metabolism |
| KEGG Orthology | - |
| Gene Ontology | GO:0005789; endoplasmic reticulum membrane |
Orthologs (automatic annotation)
| TAIR | AT4G21450 : PapD-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g04620.1 : MSP domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a030154 , Zm00025a055247 |
| Brachypodium | KQJ95033 |
| Barley | HORVU7Hr1G073060.7 , HORVU7Hr1G073060.6 , HORVU7Hr1G073060.8 , HORVU7Hr1G073060.1 , HORVU7Hr1G073060.3 , HORVU7Hr1G073060.2 , HORVU7Hr1G073060.5 , HORVU7Hr1G073060.4 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.007G035600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G205800 | chaperone protein dnaJ 10, putative, expressed | - |
| 2 | Sobic.001G347600 | paramyosin, putative, expressed | - |
| 3 | Sobic.003G324000 | 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed | K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase |
| 4 | Sobic.003G093600 | methyltransferase, putative, expressed | - |
| 5 | Sobic.004G143700 | protein phosphatase 2C, putative, expressed | - |
| 6 | Sobic.009G198900 | trehalose synthase, putative, expressed | K16055: trehalose 6-phosphate synthase/phosphatase |
| 7 | Sobic.001G368400 | glutaredoxin, putative, expressed | K17479: glutaredoxin domain-containing cysteine-rich protein 1 |
| 8 | Sobic.009G087800 | seven in absentia protein family domain containing protein, expressed | K08742: E3 ubiquitin-protein ligase SIAH2 |
| 9 | Sobic.K016900 | arginyl-tRNA--protein transferase 1, putative, expressed | - |
| 10 | Sobic.005G028400 | "Ca ATPase, IIB type"(PubMedID : 22196357)@Autoihibited Ca2+ - ATPase 11(PubMedID : 26320239)@calcium-transporting ATPase, plasma membrane-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 11 | Sobic.007G023700 | MA3 domain containing protein, expressed | - |
| 12 | Sobic.004G150400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 13 | Sobic.003G154700 | stripe rust resistance protein Yr10, putative, expressed | - |
| 14 | Sobic.003G258400 | splicing factor-related, putative, expressed | - |
| 15 | Sobic.005G096300 | Up-regulated in Setosphaeria turcica resistant genotype GA06/18 by S. turcica inoculation(PubMedID : 22050783)@-(PubMedID : 25928459)@disease resistance protein RPM1, putative, expressed | K13457: RPM1, disease resistance protein RPM1 |
| 16 | Sobic.009G156000 | arginyl-tRNA--protein transferase 1, putative, expressed | K00685: arginyl-tRNA---protein transferase |
| 17 | Sobic.007G073400 | SHR5-receptor-like kinase, putative, expressed | - |
| 18 | Sobic.002G284200 | peroxisomal multifunctional enzyme type 2, putative, expressed | - |
| 19 | Sobic.007G211000 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 20 | Sobic.003G044900 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
Gene co-expression network
Octagon: transcription factors
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