Gene annotation
Transcriptome id Sobic.009G170400.1
Synonym Sb09g023150
Functional annotation ribonuclease P family protein( (PubMedID : 26759170,(PubMedID : 24597475)
ribonuclease P family protein, putative, expressed
UniProt A0A1B6P8Y7
Pfam PF01868
Panther DB PTHR13348
NCBI CDD -
KEGG Orthology K03538; POP4, ribonuclease P protein subunit POP4
Gene Ontology GO:0008033; tRNA processing GO:0006379mRNA cleavage GO:0006364rRNA processing GO:0004540ribonuclease activity GO:0003723RNA binding GO:0000172ribonuclease MRP complex


Orthologs (automatic annotation)
TAIR AT2G43190 : ribonuclease P family protein
RAP-DB (Rice) LOC_Os05g39530.1 : ribonuclease P family protein, putative, expressed
MaizeGDB (Corn) Zm00025a043953
Brachypodium -
Barley HORVU1Hr1G076500.4 , HORVU1Hr1G076500.3 , HORVU1Hr1G076500.2 , HORVU1Hr1G076500.1
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
2 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
3 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
4 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
5 Sobic.006G028200 glycine-rich protein, putative, expressed -
6 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
7 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
8 Sobic.002G006300 expressed protein -
9 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
10 Sobic.007G011300 SGR2, putative, expressed -
11 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
12 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
13 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
14 Sobic.004G345700 TBC domain containing protein, expressed -
15 Sobic.006G202200 ENTH domain containing protein, expressed K12471: epsin
16 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
17 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
18 Sobic.003G036900 glycine-rich protein, putative, expressed -
19 Sobic.009G214900 expressed protein -
20 Sobic.004G146500 ataxin-2 related protein, putative, expressed -


Gene co-expression network
sample Sobic009G170400 Sobic009G170400 Sobic001G155000 Sobic001G155000 Sobic009G170400--Sobic001G155000 Sobic003G401000 Sobic003G401000 Sobic009G170400--Sobic003G401000 Sobic003G187400 Sobic003G187400 Sobic009G170400--Sobic003G187400 Sobic001G251700 Sobic001G251700 Sobic009G170400--Sobic001G251700 Sobic006G028200 Sobic006G028200 Sobic009G170400--Sobic006G028200 Sobic003G200200 Sobic003G200200 Sobic009G170400--Sobic003G200200 Sobic001G201400 Sobic001G201400 Sobic009G170400--Sobic001G201400 Sobic002G006300 Sobic002G006300 Sobic009G170400--Sobic002G006300 Sobic008G047800 Sobic008G047800 Sobic009G170400--Sobic008G047800 Sobic001G155000--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G155000--Sobic002G006900 Sobic001G155000--Sobic003G200200 Sobic009G040600 Sobic009G040600 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000 Sobic002G158700 Sobic002G158700 Sobic003G401000--Sobic002G158700 Sobic003G401000--Sobic003G187400 Sobic002G157300 Sobic002G157300 Sobic003G401000--Sobic002G157300 Sobic009G257800 Sobic009G257800 Sobic003G401000--Sobic009G257800 Sobic003G401000--Sobic001G155000 Sobic009G040700 Sobic009G040700 Sobic003G401000--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G401000--Sobic001G094000 Sobic003G401000--Sobic006G028200 Sobic003G008500 Sobic003G008500 Sobic003G401000--Sobic003G008500 Sobic003G187400--Sobic002G157300 Sobic005G149500 Sobic005G149500 Sobic003G187400--Sobic005G149500 Sobic003G187400--Sobic009G040700 Sobic003G187400--Sobic001G094000 Sobic006G173100 Sobic006G173100 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800 Sobic007G137900 Sobic007G137900 Sobic001G251700--Sobic007G137900 Sobic001G251700--Sobic003G200200 Sobic001G251700--Sobic002G157300 Sobic002G157000 Sobic002G157000 Sobic001G251700--Sobic002G157000 Sobic006G082600 Sobic006G082600 Sobic001G251700--Sobic006G082600 Sobic002G248400 Sobic002G248400 Sobic001G251700--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic001G251700--Sobic002G320500 Sobic003G268300 Sobic003G268300 Sobic001G251700--Sobic003G268300 Sobic003G220200 Sobic003G220200 Sobic001G251700--Sobic003G220200 Sobic006G028200--Sobic003G401000 Sobic006G028200--Sobic001G094000 Sobic006G028200--Sobic009G040700 Sobic010G189000 Sobic010G189000 Sobic006G028200--Sobic010G189000 Sobic006G028200--Sobic003G187400 Sobic006G046700 Sobic006G046700 Sobic006G028200--Sobic006G046700 Sobic001G296500 Sobic001G296500 Sobic006G028200--Sobic001G296500 Sobic003G036900 Sobic003G036900 Sobic006G028200--Sobic003G036900 Sobic001G477800 Sobic001G477800 Sobic006G028200--Sobic001G477800 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic003G200200--Sobic001G251700 Sobic007G096600 Sobic007G096600 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic003G200200--Sobic001G155000 Sobic008G173900 Sobic008G173900 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic001G201500 Sobic001G201500 Sobic001G201400--Sobic001G201500 Sobic004G039600 Sobic004G039600 Sobic001G201400--Sobic004G039600 Sobic003G187500 Sobic003G187500 Sobic001G201400--Sobic003G187500 Sobic008G131000 Sobic008G131000 Sobic001G201400--Sobic008G131000 Sobic003G401100 Sobic003G401100 Sobic001G201400--Sobic003G401100 Sobic001G201400--Sobic010G053800 Sobic006G252700 Sobic006G252700 Sobic001G201400--Sobic006G252700 Sobic001G201400--Sobic009G257800 Sobic001G466700 Sobic001G466700 Sobic001G201400--Sobic001G466700 Sobic002G006300--Sobic003G401000 Sobic002G006300--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic002G006300--Sobic007G118600 Sobic009G126400 Sobic009G126400 Sobic002G006300--Sobic009G126400 Sobic005G045300 Sobic005G045300 Sobic002G006300--Sobic005G045300 Sobic002G006300--Sobic005G149500 Sobic002G370900 Sobic002G370900 Sobic002G006300--Sobic002G370900 Sobic002G006300--Sobic002G158700 Sobic002G006300--Sobic001G155000 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600
Octagon: transcription factors


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