Gene annotation
Transcriptome id Sobic.001G043601.1
Synonym -
Functional annotation -
UniProt A0A1Z5S4B8
Pfam -
Panther DB PTHR22937
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05250 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g59540.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016496
Brachypodium PNT73941 , PNT73940 , PNT73943 , PNT73942
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G041700 TLD family protein, putative, expressed -
2 Sobic.001G291100 tetraspanin family protein, putative, expressed -
3 Sobic.007G177000 OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed K00434: L-ascorbate peroxidase
4 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
5 Sobic.001G464100 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
6 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
7 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
8 Sobic.004G205600 bromodomain domain containing protein, expressed -
9 Sobic.010G199600 hydrolase, NUDIX family, domain containing protein, expressed -
10 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
11 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
12 Sobic.007G104800 expressed protein -
13 Sobic.003G422300 recA protein, expressed K03553: recombination protein RecA
14 Sobic.002G351900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
15 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
16 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
17 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
18 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
19 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
20 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1


Gene co-expression network
sample Sobic001G043601 Sobic001G043601 Sobic008G041700 Sobic008G041700 Sobic001G043601--Sobic008G041700 Sobic001G291100 Sobic001G291100 Sobic001G043601--Sobic001G291100 Sobic007G177000 Sobic007G177000 Sobic001G043601--Sobic007G177000 Sobic007G115200 Sobic007G115200 Sobic001G043601--Sobic007G115200 Sobic001G464100 Sobic001G464100 Sobic001G043601--Sobic001G464100 Sobic001G107500 Sobic001G107500 Sobic001G043601--Sobic001G107500 Sobic007G026300 Sobic007G026300 Sobic001G043601--Sobic007G026300 Sobic004G205600 Sobic004G205600 Sobic001G043601--Sobic004G205600 Sobic010G199600 Sobic010G199600 Sobic001G043601--Sobic010G199600 Sobic009G134500 Sobic009G134500 Sobic008G041700--Sobic009G134500 Sobic010G264100 Sobic010G264100 Sobic008G041700--Sobic010G264100 Sobic007G011400 Sobic007G011400 Sobic008G041700--Sobic007G011400 Sobic005G187200 Sobic005G187200 Sobic008G041700--Sobic005G187200 Sobic005G149500 Sobic005G149500 Sobic008G041700--Sobic005G149500 Sobic002G283300 Sobic002G283300 Sobic008G041700--Sobic002G283300 Sobic007G137900 Sobic007G137900 Sobic008G041700--Sobic007G137900 Sobic010G263800 Sobic010G263800 Sobic008G041700--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic008G041700--Sobic010G026400 Sobic009G157200 Sobic009G157200 Sobic001G291100--Sobic009G157200 Sobic001G281600 Sobic001G281600 Sobic001G291100--Sobic001G281600 Sobic004G119000 Sobic004G119000 Sobic001G291100--Sobic004G119000 Sobic010G056200 Sobic010G056200 Sobic001G291100--Sobic010G056200 Sobic001G119300 Sobic001G119300 Sobic001G291100--Sobic001G119300 Sobic004G150400 Sobic004G150400 Sobic001G291100--Sobic004G150400 Sobic001G291100--Sobic001G107500 Sobic006G088100 Sobic006G088100 Sobic001G291100--Sobic006G088100 Sobic004G083700 Sobic004G083700 Sobic001G291100--Sobic004G083700 Sobic001G309400 Sobic001G309400 Sobic007G177000--Sobic001G309400 Sobic009G259400 Sobic009G259400 Sobic007G177000--Sobic009G259400 Sobic003G001100 Sobic003G001100 Sobic007G177000--Sobic003G001100 Sobic002G010300 Sobic002G010300 Sobic007G177000--Sobic002G010300 Sobic006G200600 Sobic006G200600 Sobic007G177000--Sobic006G200600 Sobic007G177000--Sobic007G115200 Sobic008G070500 Sobic008G070500 Sobic007G177000--Sobic008G070500 Sobic003G344900 Sobic003G344900 Sobic007G177000--Sobic003G344900 Sobic002G347000 Sobic002G347000 Sobic007G177000--Sobic002G347000 Sobic007G115200--Sobic001G107500 Sobic001G016000 Sobic001G016000 Sobic007G115200--Sobic001G016000 Sobic007G115200--Sobic001G309400 Sobic007G104800 Sobic007G104800 Sobic007G115200--Sobic007G104800 Sobic007G115200--Sobic002G347000 Sobic002G363600 Sobic002G363600 Sobic007G115200--Sobic002G363600 Sobic002G351900 Sobic002G351900 Sobic007G115200--Sobic002G351900 Sobic007G115200--Sobic001G281600 Sobic002G092300 Sobic002G092300 Sobic007G115200--Sobic002G092300 Sobic001G467000 Sobic001G467000 Sobic001G464100--Sobic001G467000 Sobic001G371200 Sobic001G371200 Sobic001G464100--Sobic001G371200 Sobic003G154700 Sobic003G154700 Sobic001G464100--Sobic003G154700 Sobic001G464100--Sobic001G291100 Sobic001G464100--Sobic001G119300 Sobic002G313500 Sobic002G313500 Sobic001G464100--Sobic002G313500 Sobic001G464100--Sobic001G281600 Sobic003G045400 Sobic003G045400 Sobic001G464100--Sobic003G045400 Sobic010G249300 Sobic010G249300 Sobic001G464100--Sobic010G249300 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic002G157000 Sobic002G157000 Sobic001G107500--Sobic002G157000 Sobic009G065100 Sobic009G065100 Sobic001G107500--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic001G107500--Sobic001G090400 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic001G107500--Sobic007G104800 Sobic001G107500--Sobic004G205600 Sobic004G021100 Sobic004G021100 Sobic007G026300--Sobic004G021100 Sobic007G026300--Sobic004G205600 Sobic001G512700 Sobic001G512700 Sobic007G026300--Sobic001G512700 Sobic007G026300--Sobic007G104800 Sobic004G257400 Sobic004G257400 Sobic007G026300--Sobic004G257400 Sobic007G026300--Sobic001G497300 Sobic007G200600 Sobic007G200600 Sobic007G026300--Sobic007G200600 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic004G205600--Sobic004G057400 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic004G205600--Sobic009G065100 Sobic004G205600--Sobic002G157000 Sobic002G165300 Sobic002G165300 Sobic010G199600--Sobic002G165300 Sobic009G156000 Sobic009G156000 Sobic010G199600--Sobic009G156000 Sobic007G078000 Sobic007G078000 Sobic010G199600--Sobic007G078000 Sobic010G199600--Sobic005G149500 Sobic002G284200 Sobic002G284200 Sobic010G199600--Sobic002G284200 Sobic006G122400 Sobic006G122400 Sobic010G199600--Sobic006G122400 Sobic010G199600--Sobic010G026400 Sobic007G037100 Sobic007G037100 Sobic010G199600--Sobic007G037100 Sobic006G209500 Sobic006G209500 Sobic010G199600--Sobic006G209500
Octagon: transcription factors


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