Gene annotation
Transcriptome id Sobic.008G041700.1
Synonym Sb08g003590
Functional annotation TLD family protein, putative, expressed
UniProt C5YS57
Pfam PF07534
Panther DB PTHR23354
NCBI CDD KOG2557; Uncharacterized conserved protein, contains TLDc domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06260 : TLD-domain containing nucleolar protein
RAP-DB (Rice) LOC_Os12g06100.2 : TLD family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053937
Brachypodium KQJ92181
Barley HORVU5Hr1G040400.3 , HORVU5Hr1G040400.2 , HORVU5Hr1G040400.1 , HORVU5Hr1G040400.7 , HORVU5Hr1G040400.6 , HORVU5Hr1G040400.5 , HORVU5Hr1G040400.4 , HORVU5Hr1G040400.9 , HORVU5Hr1G040400.8 , HORVU5Hr1G040400.12 , HORVU5Hr1G040400.11 , HORVU5Hr1G040400.10
Wheat TraesCS5B02G125700 , TraesCS5B02G125700 , TraesCS5A02G126500 , TraesCS5A02G126500 , TraesCS5D02G134000
Populus -


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cDNA sequences
Sobic.008G041700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G134500 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
2 Sobic.010G264100 expressed protein -
3 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
4 Sobic.005G187200 expressed protein -
5 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
6 Sobic.002G283300 protein kinase family protein, putative, expressed -
7 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
8 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
9 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
10 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
11 Sobic.010G146700 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
12 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
13 Sobic.004G196700 expressed protein -
14 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
15 Sobic.009G127900 - -
16 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
17 Sobic.K016900 arginyl-tRNA--protein transferase 1, putative, expressed -
18 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
19 Sobic.006G246900 expressed protein -
20 Sobic.001G094000 expressed protein -


Gene co-expression network
sample Sobic008G041700 Sobic008G041700 Sobic009G134500 Sobic009G134500 Sobic008G041700--Sobic009G134500 Sobic010G264100 Sobic010G264100 Sobic008G041700--Sobic010G264100 Sobic007G011400 Sobic007G011400 Sobic008G041700--Sobic007G011400 Sobic005G187200 Sobic005G187200 Sobic008G041700--Sobic005G187200 Sobic005G149500 Sobic005G149500 Sobic008G041700--Sobic005G149500 Sobic002G283300 Sobic002G283300 Sobic008G041700--Sobic002G283300 Sobic007G137900 Sobic007G137900 Sobic008G041700--Sobic007G137900 Sobic010G263800 Sobic010G263800 Sobic008G041700--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic008G041700--Sobic010G026400 Sobic006G246900 Sobic006G246900 Sobic009G134500--Sobic006G246900 Sobic006G082600 Sobic006G082600 Sobic009G134500--Sobic006G082600 Sobic009G127900 Sobic009G127900 Sobic009G134500--Sobic009G127900 Sobic001G162300 Sobic001G162300 Sobic009G134500--Sobic001G162300 Sobic002G157000 Sobic002G157000 Sobic009G134500--Sobic002G157000 Sobic009G134500--Sobic008G041700 Sobic009G134500--Sobic005G187200 Sobic007G037900 Sobic007G037900 Sobic009G134500--Sobic007G037900 Sobic007G178700 Sobic007G178700 Sobic009G134500--Sobic007G178700 Sobic010G264100--Sobic008G041700 Sobic002G300400 Sobic002G300400 Sobic010G264100--Sobic002G300400 Sobic003G268300 Sobic003G268300 Sobic010G264100--Sobic003G268300 Sobic001G413500 Sobic001G413500 Sobic010G264100--Sobic001G413500 Sobic001G094000 Sobic001G094000 Sobic010G264100--Sobic001G094000 Sobic001G168400 Sobic001G168400 Sobic010G264100--Sobic001G168400 Sobic010G264100--Sobic009G134500 Sobic010G264100--Sobic005G149500 Sobic001G477800 Sobic001G477800 Sobic010G264100--Sobic001G477800 Sobic007G011400--Sobic001G094000 Sobic007G205800 Sobic007G205800 Sobic007G011400--Sobic007G205800 Sobic002G157300 Sobic002G157300 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic007G011400--Sobic002G157000 Sobic007G011400--Sobic001G162300 Sobic008G034600 Sobic008G034600 Sobic007G011400--Sobic008G034600 Sobic005G187200--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic005G187200--Sobic004G271900 Sobic001G479500 Sobic001G479500 Sobic005G187200--Sobic001G479500 Sobic004G256600 Sobic004G256600 Sobic005G187200--Sobic004G256600 Sobic005G187200--Sobic007G205800 Sobic005G187200--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic005G187200--Sobic002G077200 Sobic005G187200--Sobic009G134500 Sobic001G194900 Sobic001G194900 Sobic005G187200--Sobic001G194900 Sobic003G187400 Sobic003G187400 Sobic005G149500--Sobic003G187400 Sobic005G149500--Sobic002G157300 Sobic005G149500--Sobic009G040700 Sobic004G196700 Sobic004G196700 Sobic005G149500--Sobic004G196700 Sobic005G149500--Sobic007G011400 Sobic006G060100 Sobic006G060100 Sobic005G149500--Sobic006G060100 Sobic007G185900 Sobic007G185900 Sobic005G149500--Sobic007G185900 Sobic005G149500--Sobic007G137900 Sobic007G078000 Sobic007G078000 Sobic005G149500--Sobic007G078000 Sobic009G156000 Sobic009G156000 Sobic002G283300--Sobic009G156000 Sobic002G283300--Sobic010G263800 Sobic004G212800 Sobic004G212800 Sobic002G283300--Sobic004G212800 Sobic004G143700 Sobic004G143700 Sobic002G283300--Sobic004G143700 Sobic006G009400 Sobic006G009400 Sobic002G283300--Sobic006G009400 SobicK016900 SobicK016900 Sobic002G283300--SobicK016900 Sobic001G287301 Sobic001G287301 Sobic002G283300--Sobic001G287301 Sobic010G248200 Sobic010G248200 Sobic002G283300--Sobic010G248200 Sobic005G130200 Sobic005G130200 Sobic002G283300--Sobic005G130200 Sobic001G251700 Sobic001G251700 Sobic007G137900--Sobic001G251700 Sobic007G137900--Sobic002G157300 Sobic007G137900--Sobic004G196700 Sobic003G200200 Sobic003G200200 Sobic007G137900--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic007G137900--Sobic003G170100 Sobic004G349900 Sobic004G349900 Sobic007G137900--Sobic004G349900 Sobic007G137900--Sobic005G149500 Sobic007G137900--Sobic007G011400 Sobic007G137900--Sobic002G157000 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic010G263800--Sobic002G077200 Sobic010G263800--Sobic002G313300 Sobic010G263800--Sobic002G157300 Sobic010G263800--Sobic007G205800 Sobic009G117400 Sobic009G117400 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic003G012500 Sobic003G012500 Sobic010G026400--Sobic003G012500 Sobic010G026400--Sobic002G157300 Sobic010G026400--Sobic009G127900 Sobic010G026400--Sobic006G009400 Sobic010G026400--Sobic007G011400 Sobic003G261300 Sobic003G261300 Sobic010G026400--Sobic003G261300 Sobic010G026400--Sobic010G263800 Sobic010G026400--Sobic005G149500 Sobic010G026400--Sobic003G187400
Octagon: transcription factors


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