Gene annotation
Transcriptome id Sobic.004G110300.1
Synonym Sb04g009010
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XZ32
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF137
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72200 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g15110.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019958 , Zm00025a034456
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G095500 NHL repeat-containing protein, putative, expressed -
2 Sobic.002G175550 - -
3 Sobic.010G153532 - -
4 Sobic.004G097800 bet v I allergen family protein, putative, expressed K14496: abscisic acid receptor PYR/PYL family
5 Sobic.009G114600 OsSigP6 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
6 Sobic.007G200100 KID-containing protein, putative, expressed -
7 Sobic.010G092100 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
8 Sobic.002G380400 heavy metal-associated domain containing protein, expressed -
9 Sobic.005G097700 - -
10 Sobic.001G038500 ANT1, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
11 Sobic.007G207300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@calvin cycle protein CP12, putative, expressed -
12 Sobic.004G083900 plant protein of unknown function domain containing protein, expressed -
13 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
14 Sobic.004G074200 abhydrolase domain-containing protein FAM108C1, putative, expressed -
15 Sobic.007G157800 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Gibberellin receptor GID1L2("PubMedID : 26759170,PubMedID : 24597475")@gibberellin receptor GID1L2, putative, expressed -
16 Sobic.001G084600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
17 Sobic.006G279700 POT family protein, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
18 Sobic.007G085350 - -
19 Sobic.003G337100 expressed protein -
20 Sobic.002G302100 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase


Gene co-expression network
sample Sobic004G110300 Sobic004G110300 Sobic010G095500 Sobic010G095500 Sobic004G110300--Sobic010G095500 Sobic002G175550 Sobic002G175550 Sobic004G110300--Sobic002G175550 Sobic010G153532 Sobic010G153532 Sobic004G110300--Sobic010G153532 Sobic004G097800 Sobic004G097800 Sobic004G110300--Sobic004G097800 Sobic009G114600 Sobic009G114600 Sobic004G110300--Sobic009G114600 Sobic007G200100 Sobic007G200100 Sobic004G110300--Sobic007G200100 Sobic010G092100 Sobic010G092100 Sobic004G110300--Sobic010G092100 Sobic002G380400 Sobic002G380400 Sobic004G110300--Sobic002G380400 Sobic005G097700 Sobic005G097700 Sobic004G110300--Sobic005G097700 Sobic007G207300 Sobic007G207300 Sobic010G095500--Sobic007G207300 Sobic010G095500--Sobic002G175550 Sobic003G221300 Sobic003G221300 Sobic010G095500--Sobic003G221300 Sobic010G095500--Sobic005G097700 Sobic009G125500 Sobic009G125500 Sobic010G095500--Sobic009G125500 Sobic007G085350 Sobic007G085350 Sobic010G095500--Sobic007G085350 Sobic010G095500--Sobic004G110300 Sobic005G232000 Sobic005G232000 Sobic010G095500--Sobic005G232000 Sobic004G066000 Sobic004G066000 Sobic010G095500--Sobic004G066000 Sobic002G175550--Sobic005G097700 Sobic007G210400 Sobic007G210400 Sobic002G175550--Sobic007G210400 Sobic002G004400 Sobic002G004400 Sobic002G175550--Sobic002G004400 Sobic001G378550 Sobic001G378550 Sobic002G175550--Sobic001G378550 Sobic006G090201 Sobic006G090201 Sobic002G175550--Sobic006G090201 Sobic002G175550--Sobic003G221300 Sobic005G037500 Sobic005G037500 Sobic002G175550--Sobic005G037500 Sobic004G330500 Sobic004G330500 Sobic002G175550--Sobic004G330500 Sobic005G189400 Sobic005G189400 Sobic002G175550--Sobic005G189400 Sobic004G074200 Sobic004G074200 Sobic010G153532--Sobic004G074200 Sobic010G153532--Sobic009G114600 Sobic010G153532--Sobic002G175550 Sobic006G004000 Sobic006G004000 Sobic010G153532--Sobic006G004000 Sobic010G153532--Sobic005G097700 Sobic003G219400 Sobic003G219400 Sobic010G153532--Sobic003G219400 Sobic006G073150 Sobic006G073150 Sobic010G153532--Sobic006G073150 Sobic001G451200 Sobic001G451200 Sobic010G153532--Sobic001G451200 Sobic010G153532--Sobic003G221300 Sobic007G224800 Sobic007G224800 Sobic004G097800--Sobic007G224800 Sobic010G036200 Sobic010G036200 Sobic004G097800--Sobic010G036200 Sobic001G430000 Sobic001G430000 Sobic004G097800--Sobic001G430000 Sobic003G201300 Sobic003G201300 Sobic004G097800--Sobic003G201300 Sobic009G116766 Sobic009G116766 Sobic004G097800--Sobic009G116766 Sobic004G300701 Sobic004G300701 Sobic004G097800--Sobic004G300701 Sobic001G038400 Sobic001G038400 Sobic004G097800--Sobic001G038400 Sobic002G359800 Sobic002G359800 Sobic004G097800--Sobic002G359800 Sobic008G078600 Sobic008G078600 Sobic004G097800--Sobic008G078600 Sobic009G114600--Sobic004G074200 Sobic009G114600--Sobic010G153532 Sobic003G060400 Sobic003G060400 Sobic009G114600--Sobic003G060400 Sobic010G242300 Sobic010G242300 Sobic009G114600--Sobic010G242300 Sobic003G144400 Sobic003G144400 Sobic009G114600--Sobic003G144400 Sobic002G103500 Sobic002G103500 Sobic009G114600--Sobic002G103500 Sobic007G017400 Sobic007G017400 Sobic009G114600--Sobic007G017400 Sobic001G056300 Sobic001G056300 Sobic009G114600--Sobic001G056300 Sobic006G204200 Sobic006G204200 Sobic009G114600--Sobic006G204200 Sobic002G273100 Sobic002G273100 Sobic007G200100--Sobic002G273100 Sobic006G100200 Sobic006G100200 Sobic007G200100--Sobic006G100200 Sobic001G041000 Sobic001G041000 Sobic007G200100--Sobic001G041000 Sobic005G107300 Sobic005G107300 Sobic007G200100--Sobic005G107300 Sobic004G166400 Sobic004G166400 Sobic007G200100--Sobic004G166400 Sobic006G241900 Sobic006G241900 Sobic007G200100--Sobic006G241900 Sobic005G155600 Sobic005G155600 Sobic007G200100--Sobic005G155600 Sobic004G035200 Sobic004G035200 Sobic007G200100--Sobic004G035200 Sobic009G100800 Sobic009G100800 Sobic007G200100--Sobic009G100800 Sobic001G038500 Sobic001G038500 Sobic010G092100--Sobic001G038500 Sobic001G361900 Sobic001G361900 Sobic010G092100--Sobic001G361900 Sobic009G010700 Sobic009G010700 Sobic010G092100--Sobic009G010700 Sobic007G159800 Sobic007G159800 Sobic010G092100--Sobic007G159800 Sobic003G178700 Sobic003G178700 Sobic010G092100--Sobic003G178700 Sobic002G376700 Sobic002G376700 Sobic010G092100--Sobic002G376700 Sobic010G092100--Sobic006G204200 Sobic001G084600 Sobic001G084600 Sobic010G092100--Sobic001G084600 Sobic008G163700 Sobic008G163700 Sobic010G092100--Sobic008G163700 Sobic005G036700 Sobic005G036700 Sobic002G380400--Sobic005G036700 Sobic001G078900 Sobic001G078900 Sobic002G380400--Sobic001G078900 Sobic010G245100 Sobic010G245100 Sobic002G380400--Sobic010G245100 Sobic009G213400 Sobic009G213400 Sobic002G380400--Sobic009G213400 Sobic002G380400--Sobic002G103500 Sobic003G320600 Sobic003G320600 Sobic002G380400--Sobic003G320600 Sobic002G380400--Sobic003G178700 Sobic003G222300 Sobic003G222300 Sobic002G380400--Sobic003G222300 Sobic001G465100 Sobic001G465100 Sobic002G380400--Sobic001G465100 Sobic005G097700--Sobic002G175550 Sobic004G356600 Sobic004G356600 Sobic005G097700--Sobic004G356600 Sobic005G097700--Sobic002G004400 Sobic005G097700--Sobic006G090201 Sobic005G097700--Sobic007G210400 Sobic007G072901 Sobic007G072901 Sobic005G097700--Sobic007G072901 Sobic003G357000 Sobic003G357000 Sobic005G097700--Sobic003G357000 Sobic002G034400 Sobic002G034400 Sobic005G097700--Sobic002G034400 Sobic006G228400 Sobic006G228400 Sobic005G097700--Sobic006G228400
Octagon: transcription factors


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