Gene annotation
Transcriptome id Sobic.007G207300.1
Synonym CP12-3, Sb07g027450
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
calvin cycle protein CP12, putative, expressed
UniProt A0A1B6PIV9
Pfam PF02672
Panther DB PTHR33921 PTHR33921:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76560 : CP12 domain-containing protein 3
RAP-DB (Rice) LOC_Os08g40240.1 : calvin cycle protein CP12, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G258100 ZOS6-10 - C2H2 zinc finger protein, expressed -
2 Sobic.010G095500 NHL repeat-containing protein, putative, expressed -
3 Sobic.010G158100 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.005G232000 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
5 Sobic.002G326050 - -
6 Sobic.010G158766 - -
7 Sobic.007G131900 expressed protein -
8 Sobic.002G140100 expressed protein -
9 Sobic.001G139600 - -
10 Sobic.007G070600 purine permease, putative, expressed -
11 Sobic.001G158000 selT/selW/selH selenoprotein domain containing protein, expressed -
12 Sobic.005G061400 expressed protein -
13 Sobic.002G218200 protein kinase domain containing protein, expressed -
14 Sobic.005G232200 expressed protein -
15 Sobic.001G223400 glucosyltransferase, putative, expressed -
16 Sobic.006G195200 purine permease, putative, expressed -
17 Sobic.006G227800 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
18 Sobic.010G206700 expressed protein -
19 Sobic.007G157800 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Gibberellin receptor GID1L2("PubMedID : 26759170,PubMedID : 24597475")@gibberellin receptor GID1L2, putative, expressed -
20 Sobic.010G099400 metalloendoproteinase 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic007G207300 Sobic007G207300 Sobic010G258100 Sobic010G258100 Sobic007G207300--Sobic010G258100 Sobic010G095500 Sobic010G095500 Sobic007G207300--Sobic010G095500 Sobic010G158100 Sobic010G158100 Sobic007G207300--Sobic010G158100 Sobic005G232000 Sobic005G232000 Sobic007G207300--Sobic005G232000 Sobic002G326050 Sobic002G326050 Sobic007G207300--Sobic002G326050 Sobic010G158766 Sobic010G158766 Sobic007G207300--Sobic010G158766 Sobic007G131900 Sobic007G131900 Sobic007G207300--Sobic007G131900 Sobic002G140100 Sobic002G140100 Sobic007G207300--Sobic002G140100 Sobic001G139600 Sobic001G139600 Sobic007G207300--Sobic001G139600 Sobic004G192700 Sobic004G192700 Sobic010G258100--Sobic004G192700 Sobic002G403400 Sobic002G403400 Sobic010G258100--Sobic002G403400 Sobic003G067500 Sobic003G067500 Sobic010G258100--Sobic003G067500 Sobic004G265400 Sobic004G265400 Sobic010G258100--Sobic004G265400 Sobic002G092700 Sobic002G092700 Sobic010G258100--Sobic002G092700 Sobic007G221800 Sobic007G221800 Sobic010G258100--Sobic007G221800 Sobic001G158000 Sobic001G158000 Sobic010G258100--Sobic001G158000 Sobic010G258100--Sobic005G232000 Sobic007G149600 Sobic007G149600 Sobic010G258100--Sobic007G149600 Sobic010G095500--Sobic007G207300 Sobic002G175550 Sobic002G175550 Sobic010G095500--Sobic002G175550 Sobic003G221300 Sobic003G221300 Sobic010G095500--Sobic003G221300 Sobic005G097700 Sobic005G097700 Sobic010G095500--Sobic005G097700 Sobic009G125500 Sobic009G125500 Sobic010G095500--Sobic009G125500 Sobic007G085350 Sobic007G085350 Sobic010G095500--Sobic007G085350 Sobic004G110300 Sobic004G110300 Sobic010G095500--Sobic004G110300 Sobic010G095500--Sobic005G232000 Sobic004G066000 Sobic004G066000 Sobic010G095500--Sobic004G066000 Sobic010G158100--Sobic001G139600 Sobic010G158100--Sobic002G326050 Sobic010G158100--Sobic002G140100 Sobic002G218200 Sobic002G218200 Sobic010G158100--Sobic002G218200 Sobic001G410800 Sobic001G410800 Sobic010G158100--Sobic001G410800 Sobic001G220200 Sobic001G220200 Sobic010G158100--Sobic001G220200 Sobic005G232200 Sobic005G232200 Sobic010G158100--Sobic005G232200 Sobic010G158100--Sobic010G158766 Sobic001G535601 Sobic001G535601 Sobic010G158100--Sobic001G535601 Sobic005G232000--Sobic010G258100 Sobic004G082151 Sobic004G082151 Sobic005G232000--Sobic004G082151 Sobic004G013500 Sobic004G013500 Sobic005G232000--Sobic004G013500 Sobic006G065700 Sobic006G065700 Sobic005G232000--Sobic006G065700 Sobic003G067300 Sobic003G067300 Sobic005G232000--Sobic003G067300 Sobic005G232000--Sobic003G067500 Sobic002G210200 Sobic002G210200 Sobic005G232000--Sobic002G210200 Sobic005G232000--Sobic007G221800 Sobic003G350100 Sobic003G350100 Sobic005G232000--Sobic003G350100 Sobic002G326050--Sobic002G140100 Sobic002G326050--Sobic010G158100 Sobic002G326050--Sobic001G139600 Sobic006G227800 Sobic006G227800 Sobic002G326050--Sobic006G227800 Sobic002G326050--Sobic001G158000 Sobic002G326050--Sobic001G220200 Sobic001G519300 Sobic001G519300 Sobic002G326050--Sobic001G519300 Sobic002G326050--Sobic002G218200 Sobic004G357033 Sobic004G357033 Sobic002G326050--Sobic004G357033 Sobic010G158766--Sobic001G220200 Sobic010G158766--Sobic004G357033 Sobic010G158766--Sobic001G410800 Sobic010G096801 Sobic010G096801 Sobic010G158766--Sobic010G096801 Sobic004G344301 Sobic004G344301 Sobic010G158766--Sobic004G344301 Sobic009G225300 Sobic009G225300 Sobic010G158766--Sobic009G225300 Sobic006G259201 Sobic006G259201 Sobic010G158766--Sobic006G259201 Sobic010G158766--Sobic010G158100 Sobic007G224600 Sobic007G224600 Sobic010G158766--Sobic007G224600 Sobic005G061400 Sobic005G061400 Sobic007G131900--Sobic005G061400 Sobic002G004100 Sobic002G004100 Sobic007G131900--Sobic002G004100 Sobic009G198400 Sobic009G198400 Sobic007G131900--Sobic009G198400 Sobic003G167825 Sobic003G167825 Sobic007G131900--Sobic003G167825 Sobic001G460800 Sobic001G460800 Sobic007G131900--Sobic001G460800 Sobic007G131900--Sobic006G065700 Sobic002G285800 Sobic002G285800 Sobic007G131900--Sobic002G285800 Sobic009G085600 Sobic009G085600 Sobic007G131900--Sobic009G085600 Sobic010G136601 Sobic010G136601 Sobic007G131900--Sobic010G136601 Sobic002G140100--Sobic001G139600 Sobic002G140100--Sobic002G326050 Sobic002G140100--Sobic005G232200 Sobic002G140100--Sobic006G227800 Sobic010G206700 Sobic010G206700 Sobic002G140100--Sobic010G206700 Sobic002G140100--Sobic010G158100 Sobic002G140100--Sobic002G218200 Sobic002G140100--Sobic001G410800 Sobic001G261553 Sobic001G261553 Sobic002G140100--Sobic001G261553 Sobic001G139600--Sobic005G232200 Sobic001G139600--Sobic002G140100 Sobic001G139600--Sobic002G218200 Sobic001G139600--Sobic010G206700 Sobic001G139600--Sobic010G158100 Sobic001G139600--Sobic001G410800 Sobic001G139600--Sobic002G326050 Sobic001G139600--Sobic001G261553 Sobic001G139600--Sobic006G227800
Octagon: transcription factors


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