Gene annotation
Transcriptome id Sobic.007G157800.1
Synonym CXE13, Sb07g023140, ATCXE13,
Functional annotation expressed high in CK60 (an inefficient nitrogen user) (PubMedID : 28697783)
Gibberellin receptor GID1L2( (PubMedID : 26759170,(PubMedID : 24597475)
gibberellin receptor GID1L2, putative, expressed
UniProt A0A1Z5RAP3
Pfam PF00135
Panther DB PTHR23024 PTHR23024:SF178
NCBI CDD KOG1515; Arylacetamide deacetylase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47480 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os08g37050.1 : gibberellin receptor GID1L2, putative, expressed
MaizeGDB (Corn) Zm00025a005437
Brachypodium KQJ89308 , KQJ90539 , PNT68270
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G165650 - -
2 Sobic.007G207300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@calvin cycle protein CP12, putative, expressed -
3 Sobic.007G070600 purine permease, putative, expressed -
4 Sobic.001G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
5 Sobic.005G097700 - -
6 Sobic.002G175550 - -
7 Sobic.001G177200 frigida, putative, expressed -
8 Sobic.002G040500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
9 Sobic.003G336400 pentatricopeptide, putative, expressed -
10 Sobic.008G175700 RING-H2 finger protein ATL5D, putative, expressed -
11 Sobic.005G008301 - -
12 Sobic.010G258600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.002G171200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
14 Sobic.010G095500 NHL repeat-containing protein, putative, expressed -
15 Sobic.009G044300 PWWP domain containing protein, expressed K17398: DNA (cytosine-5)-methyltransferase 3A
16 Sobic.003G018400 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.005G143000 expressed protein -
18 Sobic.001G428900 S-domain receptor-like protein kinase, putative, expressed -
19 Sobic.009G221701 - -
20 Sobic.001G508700 expressed protein -


Gene co-expression network
sample Sobic007G157800 Sobic007G157800 Sobic006G165650 Sobic006G165650 Sobic007G157800--Sobic006G165650 Sobic007G207300 Sobic007G207300 Sobic007G157800--Sobic007G207300 Sobic007G070600 Sobic007G070600 Sobic007G157800--Sobic007G070600 Sobic001G256900 Sobic001G256900 Sobic007G157800--Sobic001G256900 Sobic005G097700 Sobic005G097700 Sobic007G157800--Sobic005G097700 Sobic002G175550 Sobic002G175550 Sobic007G157800--Sobic002G175550 Sobic001G177200 Sobic001G177200 Sobic007G157800--Sobic001G177200 Sobic002G040500 Sobic002G040500 Sobic007G157800--Sobic002G040500 Sobic003G336400 Sobic003G336400 Sobic007G157800--Sobic003G336400 Sobic006G165650--Sobic007G157800 Sobic006G165650--Sobic002G040500 Sobic009G206400 Sobic009G206400 Sobic006G165650--Sobic009G206400 Sobic006G165650--Sobic007G207300 Sobic008G175700 Sobic008G175700 Sobic006G165650--Sobic008G175700 Sobic006G165650--Sobic002G175550 Sobic006G165650--Sobic001G177200 Sobic006G165650--Sobic005G097700 Sobic006G165650--Sobic001G256900 Sobic010G258100 Sobic010G258100 Sobic007G207300--Sobic010G258100 Sobic010G095500 Sobic010G095500 Sobic007G207300--Sobic010G095500 Sobic010G158100 Sobic010G158100 Sobic007G207300--Sobic010G158100 Sobic005G232000 Sobic005G232000 Sobic007G207300--Sobic005G232000 Sobic002G326050 Sobic002G326050 Sobic007G207300--Sobic002G326050 Sobic010G158766 Sobic010G158766 Sobic007G207300--Sobic010G158766 Sobic007G131900 Sobic007G131900 Sobic007G207300--Sobic007G131900 Sobic002G140100 Sobic002G140100 Sobic007G207300--Sobic002G140100 Sobic001G139600 Sobic001G139600 Sobic007G207300--Sobic001G139600 Sobic003G224000 Sobic003G224000 Sobic007G070600--Sobic003G224000 Sobic001G535601 Sobic001G535601 Sobic007G070600--Sobic001G535601 Sobic001G378150 Sobic001G378150 Sobic007G070600--Sobic001G378150 Sobic005G008301 Sobic005G008301 Sobic007G070600--Sobic005G008301 Sobic001G062400 Sobic001G062400 Sobic007G070600--Sobic001G062400 Sobic003G013400 Sobic003G013400 Sobic007G070600--Sobic003G013400 Sobic005G232200 Sobic005G232200 Sobic007G070600--Sobic005G232200 Sobic002G218200 Sobic002G218200 Sobic007G070600--Sobic002G218200 Sobic007G070600--Sobic001G139600 Sobic004G356600 Sobic004G356600 Sobic001G256900--Sobic004G356600 Sobic007G210400 Sobic007G210400 Sobic001G256900--Sobic007G210400 Sobic003G423100 Sobic003G423100 Sobic001G256900--Sobic003G423100 Sobic001G256900--Sobic005G097700 Sobic003G343100 Sobic003G343100 Sobic001G256900--Sobic003G343100 Sobic006G090201 Sobic006G090201 Sobic001G256900--Sobic006G090201 Sobic001G378550 Sobic001G378550 Sobic001G256900--Sobic001G378550 Sobic010G231400 Sobic010G231400 Sobic001G256900--Sobic010G231400 Sobic001G049000 Sobic001G049000 Sobic001G256900--Sobic001G049000 Sobic005G097700--Sobic002G175550 Sobic005G097700--Sobic004G356600 Sobic002G004400 Sobic002G004400 Sobic005G097700--Sobic002G004400 Sobic005G097700--Sobic006G090201 Sobic005G097700--Sobic007G210400 Sobic007G072901 Sobic007G072901 Sobic005G097700--Sobic007G072901 Sobic003G357000 Sobic003G357000 Sobic005G097700--Sobic003G357000 Sobic002G034400 Sobic002G034400 Sobic005G097700--Sobic002G034400 Sobic006G228400 Sobic006G228400 Sobic005G097700--Sobic006G228400 Sobic002G175550--Sobic005G097700 Sobic002G175550--Sobic007G210400 Sobic002G175550--Sobic002G004400 Sobic002G175550--Sobic001G378550 Sobic002G175550--Sobic006G090201 Sobic003G221300 Sobic003G221300 Sobic002G175550--Sobic003G221300 Sobic005G037500 Sobic005G037500 Sobic002G175550--Sobic005G037500 Sobic004G330500 Sobic004G330500 Sobic002G175550--Sobic004G330500 Sobic005G189400 Sobic005G189400 Sobic002G175550--Sobic005G189400 Sobic009G221701 Sobic009G221701 Sobic001G177200--Sobic009G221701 Sobic006G116600 Sobic006G116600 Sobic001G177200--Sobic006G116600 Sobic001G177200--Sobic003G336400 Sobic001G177200--Sobic008G175700 Sobic003G396400 Sobic003G396400 Sobic001G177200--Sobic003G396400 Sobic010G217466 Sobic010G217466 Sobic001G177200--Sobic010G217466 Sobic005G143000 Sobic005G143000 Sobic001G177200--Sobic005G143000 Sobic006G242600 Sobic006G242600 Sobic001G177200--Sobic006G242600 Sobic002G149550 Sobic002G149550 Sobic001G177200--Sobic002G149550 Sobic005G208500 Sobic005G208500 Sobic002G040500--Sobic005G208500 Sobic002G040500--Sobic006G165650 Sobic002G002400 Sobic002G002400 Sobic002G040500--Sobic002G002400 Sobic002G040500--Sobic009G206400 Sobic003G325300 Sobic003G325300 Sobic002G040500--Sobic003G325300 Sobic009G070900 Sobic009G070900 Sobic002G040500--Sobic009G070900 Sobic002G040500--Sobic002G175550 Sobic002G040500--Sobic001G378550 Sobic002G040500--Sobic003G423100 Sobic010G258600 Sobic010G258600 Sobic003G336400--Sobic010G258600 Sobic003G336400--Sobic006G116600 Sobic003G336400--Sobic001G378150 Sobic003G398900 Sobic003G398900 Sobic003G336400--Sobic003G398900 Sobic003G336400--Sobic001G177200 Sobic003G336400--Sobic003G013400 Sobic003G336400--Sobic002G149550 Sobic003G336400--Sobic009G221701 Sobic002G429200 Sobic002G429200 Sobic003G336400--Sobic002G429200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.