Gene annotation
Transcriptome id Sobic.005G143000.1,Sobic.005G143000.3,Sobic.005G143000.2
Synonym Sb05g020825, AXR4, RGR, RGR1
Functional annotation expressed protein
UniProt A0A1Z5RJ80 , A0A1Z5RIJ7 , A0A1Z5RIL4
Pfam PF12697
Panther DB PTHR10992 PTHR10992:SF773
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G54990 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os11g34140.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G143000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G177200 frigida, putative, expressed -
2 Sobic.006G116600 anthranilate phosphoribosyltransferase, putative, expressed -
3 Sobic.008G175700 RING-H2 finger protein ATL5D, putative, expressed -
4 Sobic.001G378150 - -
5 Sobic.002G246950 - -
6 Sobic.003G336400 pentatricopeptide, putative, expressed -
7 Sobic.003G018400 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.009G221701 - -
9 Sobic.010G258600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.002G411700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.002G149550 - K03879: NADH-ubiquinone oxidoreductase chain 2
12 Sobic.010G217466 - -
13 Sobic.003G398900 tetratricopeptide-like helical, putative, expressed -
14 Sobic.001G278400 expressed protein -
15 Sobic.002G264700 RNA recognition motif containing protein, putative, expressed -
16 Sobic.002G429200 expressed protein -
17 Sobic.003G013400 S-locus lectin protein kinase family protein, putative, expressed -
18 Sobic.005G161000 expressed protein -
19 Sobic.002G285950 - -
20 Sobic.002G171200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -


Gene co-expression network
sample Sobic005G143000 Sobic005G143000 Sobic001G177200 Sobic001G177200 Sobic005G143000--Sobic001G177200 Sobic006G116600 Sobic006G116600 Sobic005G143000--Sobic006G116600 Sobic008G175700 Sobic008G175700 Sobic005G143000--Sobic008G175700 Sobic001G378150 Sobic001G378150 Sobic005G143000--Sobic001G378150 Sobic002G246950 Sobic002G246950 Sobic005G143000--Sobic002G246950 Sobic003G336400 Sobic003G336400 Sobic005G143000--Sobic003G336400 Sobic003G018400 Sobic003G018400 Sobic005G143000--Sobic003G018400 Sobic009G221701 Sobic009G221701 Sobic005G143000--Sobic009G221701 Sobic010G258600 Sobic010G258600 Sobic005G143000--Sobic010G258600 Sobic001G177200--Sobic009G221701 Sobic001G177200--Sobic006G116600 Sobic001G177200--Sobic003G336400 Sobic001G177200--Sobic008G175700 Sobic003G396400 Sobic003G396400 Sobic001G177200--Sobic003G396400 Sobic010G217466 Sobic010G217466 Sobic001G177200--Sobic010G217466 Sobic001G177200--Sobic005G143000 Sobic006G242600 Sobic006G242600 Sobic001G177200--Sobic006G242600 Sobic002G149550 Sobic002G149550 Sobic001G177200--Sobic002G149550 Sobic002G411700 Sobic002G411700 Sobic006G116600--Sobic002G411700 Sobic006G116600--Sobic009G221701 Sobic006G116600--Sobic010G217466 Sobic006G116600--Sobic002G149550 Sobic006G116600--Sobic006G242600 Sobic006G116600--Sobic003G336400 Sobic006G116600--Sobic001G177200 Sobic006G116600--Sobic008G175700 Sobic006G116600--Sobic001G378150 Sobic002G429200 Sobic002G429200 Sobic008G175700--Sobic002G429200 Sobic008G175700--Sobic006G242600 Sobic008G175700--Sobic009G221701 Sobic010G149900 Sobic010G149900 Sobic008G175700--Sobic010G149900 Sobic008G175700--Sobic001G177200 Sobic008G175700--Sobic006G116600 Sobic008G175700--Sobic003G396400 Sobic002G410050 Sobic002G410050 Sobic008G175700--Sobic002G410050 Sobic006G153550 Sobic006G153550 Sobic008G175700--Sobic006G153550 Sobic002G285950 Sobic002G285950 Sobic001G378150--Sobic002G285950 Sobic007G119300 Sobic007G119300 Sobic001G378150--Sobic007G119300 Sobic001G378150--Sobic010G217466 Sobic001G378150--Sobic009G221701 Sobic001G378150--Sobic002G429200 Sobic001G378150--Sobic002G149550 Sobic001G378150--Sobic002G246950 Sobic001G378150--Sobic003G336400 Sobic003G224000 Sobic003G224000 Sobic001G378150--Sobic003G224000 Sobic002G060750 Sobic002G060750 Sobic002G246950--Sobic002G060750 Sobic003G398900 Sobic003G398900 Sobic002G246950--Sobic003G398900 Sobic002G246950--Sobic003G018400 Sobic003G303800 Sobic003G303800 Sobic002G246950--Sobic003G303800 Sobic002G246950--Sobic001G378150 Sobic002G246950--Sobic002G411700 Sobic002G246950--Sobic002G285950 Sobic002G246950--Sobic002G149550 Sobic007G094000 Sobic007G094000 Sobic002G246950--Sobic007G094000 Sobic003G336400--Sobic010G258600 Sobic003G336400--Sobic006G116600 Sobic003G336400--Sobic001G378150 Sobic003G336400--Sobic003G398900 Sobic003G336400--Sobic001G177200 Sobic003G013400 Sobic003G013400 Sobic003G336400--Sobic003G013400 Sobic003G336400--Sobic002G149550 Sobic003G336400--Sobic009G221701 Sobic003G336400--Sobic002G429200 Sobic003G018400--Sobic002G246950 Sobic003G018400--Sobic010G217466 Sobic003G018400--Sobic002G060750 Sobic003G018400--Sobic001G378150 Sobic003G018400--Sobic002G149550 Sobic003G018400--Sobic009G221701 Sobic003G018400--Sobic002G285950 Sobic003G018400--Sobic002G411700 Sobic002G264700 Sobic002G264700 Sobic003G018400--Sobic002G264700 Sobic009G221701--Sobic010G217466 Sobic009G221701--Sobic002G149550 Sobic009G221701--Sobic006G242600 Sobic009G221701--Sobic002G429200 Sobic009G221701--Sobic003G396400 Sobic005G106800 Sobic005G106800 Sobic009G221701--Sobic005G106800 Sobic003G299400 Sobic003G299400 Sobic009G221701--Sobic003G299400 Sobic009G221701--Sobic002G285950 Sobic009G221701--Sobic006G116600 Sobic010G258600--Sobic003G336400 Sobic005G008301 Sobic005G008301 Sobic010G258600--Sobic005G008301 Sobic002G171200 Sobic002G171200 Sobic010G258600--Sobic002G171200 Sobic010G258600--Sobic001G177200 Sobic010G069000 Sobic010G069000 Sobic010G258600--Sobic010G069000 Sobic010G258600--Sobic002G264700 Sobic005G161000 Sobic005G161000 Sobic010G258600--Sobic005G161000 Sobic010G258600--Sobic003G398900 Sobic010G258600--Sobic001G378150
Octagon: transcription factors


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