Gene annotation
Transcriptome id Sobic.010G258600.1
Synonym Sb10g029530
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1W0VUY0
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF36
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36730 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os09g24640.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a018437
Brachypodium KQJ90213
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G336400 pentatricopeptide, putative, expressed -
2 Sobic.005G008301 - -
3 Sobic.002G171200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
4 Sobic.001G177200 frigida, putative, expressed -
5 Sobic.010G069000 - -
6 Sobic.002G264700 RNA recognition motif containing protein, putative, expressed -
7 Sobic.005G161000 expressed protein -
8 Sobic.003G398900 tetratricopeptide-like helical, putative, expressed -
9 Sobic.001G378150 - -
10 Sobic.003G013400 S-locus lectin protein kinase family protein, putative, expressed -
11 Sobic.010G173550 - -
12 Sobic.003G198701 - -
13 Sobic.001G060666 - -
14 Sobic.002G149550 - K03879: NADH-ubiquinone oxidoreductase chain 2
15 Sobic.007G070600 purine permease, putative, expressed -
16 Sobic.008G175700 RING-H2 finger protein ATL5D, putative, expressed -
17 Sobic.002G246950 - -
18 Sobic.009G221701 - -
19 Sobic.005G143000 expressed protein -
20 Sobic.006G116600 anthranilate phosphoribosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic010G258600 Sobic010G258600 Sobic003G336400 Sobic003G336400 Sobic010G258600--Sobic003G336400 Sobic005G008301 Sobic005G008301 Sobic010G258600--Sobic005G008301 Sobic002G171200 Sobic002G171200 Sobic010G258600--Sobic002G171200 Sobic001G177200 Sobic001G177200 Sobic010G258600--Sobic001G177200 Sobic010G069000 Sobic010G069000 Sobic010G258600--Sobic010G069000 Sobic002G264700 Sobic002G264700 Sobic010G258600--Sobic002G264700 Sobic005G161000 Sobic005G161000 Sobic010G258600--Sobic005G161000 Sobic003G398900 Sobic003G398900 Sobic010G258600--Sobic003G398900 Sobic001G378150 Sobic001G378150 Sobic010G258600--Sobic001G378150 Sobic003G336400--Sobic010G258600 Sobic006G116600 Sobic006G116600 Sobic003G336400--Sobic006G116600 Sobic003G336400--Sobic001G378150 Sobic003G336400--Sobic003G398900 Sobic003G336400--Sobic001G177200 Sobic003G013400 Sobic003G013400 Sobic003G336400--Sobic003G013400 Sobic002G149550 Sobic002G149550 Sobic003G336400--Sobic002G149550 Sobic009G221701 Sobic009G221701 Sobic003G336400--Sobic009G221701 Sobic002G429200 Sobic002G429200 Sobic003G336400--Sobic002G429200 Sobic004G325766 Sobic004G325766 Sobic005G008301--Sobic004G325766 Sobic007G152200 Sobic007G152200 Sobic005G008301--Sobic007G152200 Sobic001G060666 Sobic001G060666 Sobic005G008301--Sobic001G060666 Sobic010G231400 Sobic010G231400 Sobic005G008301--Sobic010G231400 Sobic002G205201 Sobic002G205201 Sobic005G008301--Sobic002G205201 Sobic006G185400 Sobic006G185400 Sobic005G008301--Sobic006G185400 Sobic010G173550 Sobic010G173550 Sobic005G008301--Sobic010G173550 Sobic004G330500 Sobic004G330500 Sobic005G008301--Sobic004G330500 Sobic010G275550 Sobic010G275550 Sobic005G008301--Sobic010G275550 Sobic002G171200--Sobic010G173550 Sobic002G171200--Sobic005G008301 Sobic003G045800 Sobic003G045800 Sobic002G171200--Sobic003G045800 Sobic007G210400 Sobic007G210400 Sobic002G171200--Sobic007G210400 Sobic003G198701 Sobic003G198701 Sobic002G171200--Sobic003G198701 Sobic002G410050 Sobic002G410050 Sobic002G171200--Sobic002G410050 Sobic003G299400 Sobic003G299400 Sobic002G171200--Sobic003G299400 Sobic002G171200--Sobic004G325766 Sobic003G423100 Sobic003G423100 Sobic002G171200--Sobic003G423100 Sobic001G177200--Sobic009G221701 Sobic001G177200--Sobic006G116600 Sobic001G177200--Sobic003G336400 Sobic008G175700 Sobic008G175700 Sobic001G177200--Sobic008G175700 Sobic003G396400 Sobic003G396400 Sobic001G177200--Sobic003G396400 Sobic010G217466 Sobic010G217466 Sobic001G177200--Sobic010G217466 Sobic005G143000 Sobic005G143000 Sobic001G177200--Sobic005G143000 Sobic006G242600 Sobic006G242600 Sobic001G177200--Sobic006G242600 Sobic001G177200--Sobic002G149550 Sobic010G069000--Sobic005G008301 Sobic010G069000--Sobic008G175700 Sobic010G074960 Sobic010G074960 Sobic010G069000--Sobic010G074960 Sobic010G069000--Sobic010G258600 Sobic001G300750 Sobic001G300750 Sobic010G069000--Sobic001G300750 Sobic003G224000 Sobic003G224000 Sobic010G069000--Sobic003G224000 Sobic010G069000--Sobic001G060666 Sobic010G069000--Sobic003G013400 Sobic010G069000--Sobic003G336400 Sobic003G192801 Sobic003G192801 Sobic002G264700--Sobic003G192801 Sobic002G264700--Sobic010G217466 Sobic002G264700--Sobic010G173550 Sobic002G264700--Sobic002G171200 Sobic002G264700--Sobic001G378150 Sobic002G246950 Sobic002G246950 Sobic002G264700--Sobic002G246950 Sobic002G295550 Sobic002G295550 Sobic002G264700--Sobic002G295550 Sobic002G264700--Sobic002G149550 Sobic002G264700--Sobic009G221701 Sobic005G161000--Sobic003G398900 Sobic001G484500 Sobic001G484500 Sobic005G161000--Sobic001G484500 Sobic005G161000--Sobic003G336400 Sobic006G247400 Sobic006G247400 Sobic005G161000--Sobic006G247400 Sobic005G161000--Sobic010G258600 Sobic005G161000--Sobic002G246950 Sobic007G084400 Sobic007G084400 Sobic005G161000--Sobic007G084400 Sobic009G160300 Sobic009G160300 Sobic005G161000--Sobic009G160300 Sobic002G411700 Sobic002G411700 Sobic005G161000--Sobic002G411700 Sobic003G398900--Sobic002G246950 Sobic003G398900--Sobic002G411700 Sobic003G398900--Sobic005G161000 Sobic003G398900--Sobic001G484500 Sobic003G398900--Sobic003G336400 Sobic003G303800 Sobic003G303800 Sobic003G398900--Sobic003G303800 Sobic002G060750 Sobic002G060750 Sobic003G398900--Sobic002G060750 Sobic003G398900--Sobic009G160300 Sobic003G398900--Sobic006G116600 Sobic002G285950 Sobic002G285950 Sobic001G378150--Sobic002G285950 Sobic007G119300 Sobic007G119300 Sobic001G378150--Sobic007G119300 Sobic001G378150--Sobic010G217466 Sobic001G378150--Sobic009G221701 Sobic001G378150--Sobic002G429200 Sobic001G378150--Sobic002G149550 Sobic001G378150--Sobic002G246950 Sobic001G378150--Sobic003G336400 Sobic001G378150--Sobic003G224000
Octagon: transcription factors


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