Gene annotation
Transcriptome id Sobic.003G398900.1
Synonym Sb03g043550
Functional annotation tetratricopeptide-like helical, putative, expressed
UniProt C5XG55
Pfam PF12854 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF239
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37570 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os01g68490.1 : tetratricopeptide-like helical, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK11154
Barley HORVU3Hr1G092840.2 , HORVU3Hr1G092840.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G246950 - -
2 Sobic.002G411700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.005G161000 expressed protein -
4 Sobic.001G484500 - -
5 Sobic.003G336400 pentatricopeptide, putative, expressed -
6 Sobic.003G303800 tesmin/TSO1-like CXC domain containing protein, expressed -
7 Sobic.002G060750 - -
8 Sobic.009G160300 - -
9 Sobic.006G116600 anthranilate phosphoribosyltransferase, putative, expressed -
10 Sobic.010G258600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.001G378150 - -
12 Sobic.007G084400 - -
13 Sobic.002G149550 - K03879: NADH-ubiquinone oxidoreductase chain 2
14 Sobic.007G094000 - -
15 Sobic.005G143000 expressed protein -
16 Sobic.003G018400 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.001G278400 expressed protein -
18 Sobic.006G247400 transferase family protein, putative, expressed -
19 Sobic.001G177200 frigida, putative, expressed -
20 Sobic.007G052500 - -


Gene co-expression network
sample Sobic003G398900 Sobic003G398900 Sobic002G246950 Sobic002G246950 Sobic003G398900--Sobic002G246950 Sobic002G411700 Sobic002G411700 Sobic003G398900--Sobic002G411700 Sobic005G161000 Sobic005G161000 Sobic003G398900--Sobic005G161000 Sobic001G484500 Sobic001G484500 Sobic003G398900--Sobic001G484500 Sobic003G336400 Sobic003G336400 Sobic003G398900--Sobic003G336400 Sobic003G303800 Sobic003G303800 Sobic003G398900--Sobic003G303800 Sobic002G060750 Sobic002G060750 Sobic003G398900--Sobic002G060750 Sobic009G160300 Sobic009G160300 Sobic003G398900--Sobic009G160300 Sobic006G116600 Sobic006G116600 Sobic003G398900--Sobic006G116600 Sobic002G246950--Sobic002G060750 Sobic002G246950--Sobic003G398900 Sobic003G018400 Sobic003G018400 Sobic002G246950--Sobic003G018400 Sobic002G246950--Sobic003G303800 Sobic001G378150 Sobic001G378150 Sobic002G246950--Sobic001G378150 Sobic002G246950--Sobic002G411700 Sobic002G285950 Sobic002G285950 Sobic002G246950--Sobic002G285950 Sobic002G149550 Sobic002G149550 Sobic002G246950--Sobic002G149550 Sobic007G094000 Sobic007G094000 Sobic002G246950--Sobic007G094000 Sobic002G411700--Sobic006G116600 Sobic002G411700--Sobic003G398900 Sobic001G104050 Sobic001G104050 Sobic002G411700--Sobic001G104050 Sobic001G296600 Sobic001G296600 Sobic002G411700--Sobic001G296600 Sobic010G217466 Sobic010G217466 Sobic002G411700--Sobic010G217466 Sobic002G411700--Sobic002G246950 Sobic002G411700--Sobic002G149550 Sobic007G044350 Sobic007G044350 Sobic002G411700--Sobic007G044350 Sobic004G060000 Sobic004G060000 Sobic002G411700--Sobic004G060000 Sobic005G161000--Sobic003G398900 Sobic005G161000--Sobic001G484500 Sobic005G161000--Sobic003G336400 Sobic006G247400 Sobic006G247400 Sobic005G161000--Sobic006G247400 Sobic010G258600 Sobic010G258600 Sobic005G161000--Sobic010G258600 Sobic005G161000--Sobic002G246950 Sobic007G084400 Sobic007G084400 Sobic005G161000--Sobic007G084400 Sobic005G161000--Sobic009G160300 Sobic005G161000--Sobic002G411700 Sobic001G484500--Sobic003G398900 Sobic001G484500--Sobic009G160300 Sobic007G052500 Sobic007G052500 Sobic001G484500--Sobic007G052500 Sobic001G484500--Sobic005G161000 Sobic001G484500--Sobic003G303800 Sobic001G484500--Sobic002G246950 Sobic001G283800 Sobic001G283800 Sobic001G484500--Sobic001G283800 Sobic001G484500--Sobic006G247400 Sobic001G278400 Sobic001G278400 Sobic001G484500--Sobic001G278400 Sobic003G336400--Sobic010G258600 Sobic003G336400--Sobic006G116600 Sobic003G336400--Sobic001G378150 Sobic003G336400--Sobic003G398900 Sobic001G177200 Sobic001G177200 Sobic003G336400--Sobic001G177200 Sobic003G013400 Sobic003G013400 Sobic003G336400--Sobic003G013400 Sobic003G336400--Sobic002G149550 Sobic009G221701 Sobic009G221701 Sobic003G336400--Sobic009G221701 Sobic002G429200 Sobic002G429200 Sobic003G336400--Sobic002G429200 Sobic003G303800--Sobic007G094000 Sobic003G303800--Sobic007G052500 Sobic003G303800--Sobic002G246950 Sobic003G303800--Sobic001G283800 Sobic003G303800--Sobic002G060750 Sobic002G274300 Sobic002G274300 Sobic003G303800--Sobic002G274300 Sobic003G303800--Sobic009G160300 Sobic003G303800--Sobic003G398900 Sobic001G540250 Sobic001G540250 Sobic003G303800--Sobic001G540250 Sobic002G060750--Sobic002G246950 Sobic001G275400 Sobic001G275400 Sobic002G060750--Sobic001G275400 Sobic002G060750--Sobic003G303800 Sobic002G060750--Sobic003G398900 Sobic002G060750--Sobic003G018400 Sobic002G060750--Sobic007G094000 Sobic001G302100 Sobic001G302100 Sobic002G060750--Sobic001G302100 Sobic002G060750--Sobic002G274300 Sobic002G264700 Sobic002G264700 Sobic002G060750--Sobic002G264700 Sobic009G160300--Sobic007G052500 Sobic008G039200 Sobic008G039200 Sobic009G160300--Sobic008G039200 Sobic001G089900 Sobic001G089900 Sobic009G160300--Sobic001G089900 Sobic010G154801 Sobic010G154801 Sobic009G160300--Sobic010G154801 Sobic003G253100 Sobic003G253100 Sobic009G160300--Sobic003G253100 Sobic010G277400 Sobic010G277400 Sobic009G160300--Sobic010G277400 Sobic009G160300--Sobic001G283800 Sobic009G209150 Sobic009G209150 Sobic009G160300--Sobic009G209150 Sobic009G160300--Sobic001G484500 Sobic006G116600--Sobic002G411700 Sobic006G116600--Sobic009G221701 Sobic006G116600--Sobic010G217466 Sobic006G116600--Sobic002G149550 Sobic006G242600 Sobic006G242600 Sobic006G116600--Sobic006G242600 Sobic006G116600--Sobic003G336400 Sobic006G116600--Sobic001G177200 Sobic008G175700 Sobic008G175700 Sobic006G116600--Sobic008G175700 Sobic006G116600--Sobic001G378150
Octagon: transcription factors


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