Gene annotation
Transcriptome id Sobic.003G018400.1
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6Q0V6
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G42360 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g11500.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022920
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G246950 - -
2 Sobic.010G217466 - -
3 Sobic.002G060750 - -
4 Sobic.001G378150 - -
5 Sobic.002G149550 - K03879: NADH-ubiquinone oxidoreductase chain 2
6 Sobic.009G221701 - -
7 Sobic.002G285950 - -
8 Sobic.002G411700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.002G264700 RNA recognition motif containing protein, putative, expressed -
10 Sobic.010G084900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
11 Sobic.007G044350 - -
12 Sobic.005G143000 expressed protein -
13 Sobic.001G278400 expressed protein -
14 Sobic.004G258450 - -
15 Sobic.004G060000 DUF630/DUF632 domains containing protein, putative, expressed -
16 Sobic.001G428900 S-domain receptor-like protein kinase, putative, expressed -
17 Sobic.001G460150 - -
18 Sobic.003G303800 tesmin/TSO1-like CXC domain containing protein, expressed -
19 Sobic.002G429200 expressed protein -
20 Sobic.007G094000 - -


Gene co-expression network
sample Sobic003G018400 Sobic003G018400 Sobic002G246950 Sobic002G246950 Sobic003G018400--Sobic002G246950 Sobic010G217466 Sobic010G217466 Sobic003G018400--Sobic010G217466 Sobic002G060750 Sobic002G060750 Sobic003G018400--Sobic002G060750 Sobic001G378150 Sobic001G378150 Sobic003G018400--Sobic001G378150 Sobic002G149550 Sobic002G149550 Sobic003G018400--Sobic002G149550 Sobic009G221701 Sobic009G221701 Sobic003G018400--Sobic009G221701 Sobic002G285950 Sobic002G285950 Sobic003G018400--Sobic002G285950 Sobic002G411700 Sobic002G411700 Sobic003G018400--Sobic002G411700 Sobic002G264700 Sobic002G264700 Sobic003G018400--Sobic002G264700 Sobic002G246950--Sobic002G060750 Sobic003G398900 Sobic003G398900 Sobic002G246950--Sobic003G398900 Sobic002G246950--Sobic003G018400 Sobic003G303800 Sobic003G303800 Sobic002G246950--Sobic003G303800 Sobic002G246950--Sobic001G378150 Sobic002G246950--Sobic002G411700 Sobic002G246950--Sobic002G285950 Sobic002G246950--Sobic002G149550 Sobic007G094000 Sobic007G094000 Sobic002G246950--Sobic007G094000 Sobic010G217466--Sobic009G221701 Sobic010G217466--Sobic002G149550 Sobic006G242600 Sobic006G242600 Sobic010G217466--Sobic006G242600 Sobic003G396400 Sobic003G396400 Sobic010G217466--Sobic003G396400 Sobic002G429200 Sobic002G429200 Sobic010G217466--Sobic002G429200 Sobic006G116600 Sobic006G116600 Sobic010G217466--Sobic006G116600 Sobic010G217466--Sobic002G285950 Sobic010G149900 Sobic010G149900 Sobic010G217466--Sobic010G149900 Sobic010G217466--Sobic001G378150 Sobic002G060750--Sobic002G246950 Sobic001G275400 Sobic001G275400 Sobic002G060750--Sobic001G275400 Sobic002G060750--Sobic003G303800 Sobic002G060750--Sobic003G398900 Sobic002G060750--Sobic003G018400 Sobic002G060750--Sobic007G094000 Sobic001G302100 Sobic001G302100 Sobic002G060750--Sobic001G302100 Sobic002G274300 Sobic002G274300 Sobic002G060750--Sobic002G274300 Sobic002G060750--Sobic002G264700 Sobic001G378150--Sobic002G285950 Sobic007G119300 Sobic007G119300 Sobic001G378150--Sobic007G119300 Sobic001G378150--Sobic010G217466 Sobic001G378150--Sobic009G221701 Sobic001G378150--Sobic002G429200 Sobic001G378150--Sobic002G149550 Sobic001G378150--Sobic002G246950 Sobic003G336400 Sobic003G336400 Sobic001G378150--Sobic003G336400 Sobic003G224000 Sobic003G224000 Sobic001G378150--Sobic003G224000 Sobic002G149550--Sobic009G221701 Sobic002G149550--Sobic010G217466 Sobic002G149550--Sobic002G285950 Sobic002G149550--Sobic006G242600 Sobic002G149550--Sobic006G116600 Sobic002G149550--Sobic001G378150 Sobic002G149550--Sobic002G429200 Sobic002G149550--Sobic003G396400 Sobic002G149550--Sobic003G336400 Sobic009G221701--Sobic010G217466 Sobic009G221701--Sobic002G149550 Sobic009G221701--Sobic006G242600 Sobic009G221701--Sobic002G429200 Sobic009G221701--Sobic003G396400 Sobic005G106800 Sobic005G106800 Sobic009G221701--Sobic005G106800 Sobic003G299400 Sobic003G299400 Sobic009G221701--Sobic003G299400 Sobic009G221701--Sobic002G285950 Sobic009G221701--Sobic006G116600 Sobic002G285950--Sobic001G378150 Sobic002G285950--Sobic002G149550 Sobic002G285950--Sobic009G221701 Sobic002G285950--Sobic010G217466 Sobic002G331700 Sobic002G331700 Sobic002G285950--Sobic002G331700 Sobic002G285950--Sobic007G119300 Sobic002G426650 Sobic002G426650 Sobic002G285950--Sobic002G426650 Sobic007G212700 Sobic007G212700 Sobic002G285950--Sobic007G212700 Sobic006G208600 Sobic006G208600 Sobic002G285950--Sobic006G208600 Sobic002G411700--Sobic006G116600 Sobic002G411700--Sobic003G398900 Sobic001G104050 Sobic001G104050 Sobic002G411700--Sobic001G104050 Sobic001G296600 Sobic001G296600 Sobic002G411700--Sobic001G296600 Sobic002G411700--Sobic010G217466 Sobic002G411700--Sobic002G246950 Sobic002G411700--Sobic002G149550 Sobic007G044350 Sobic007G044350 Sobic002G411700--Sobic007G044350 Sobic004G060000 Sobic004G060000 Sobic002G411700--Sobic004G060000 Sobic003G192801 Sobic003G192801 Sobic002G264700--Sobic003G192801 Sobic002G264700--Sobic010G217466 Sobic010G173550 Sobic010G173550 Sobic002G264700--Sobic010G173550 Sobic002G171200 Sobic002G171200 Sobic002G264700--Sobic002G171200 Sobic002G264700--Sobic001G378150 Sobic002G264700--Sobic002G246950 Sobic002G295550 Sobic002G295550 Sobic002G264700--Sobic002G295550 Sobic002G264700--Sobic002G149550 Sobic002G264700--Sobic009G221701
Octagon: transcription factors


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