Gene annotation
Transcriptome id Sobic.002G411700.1
Synonym Sb02g042450
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5X4X6
Pfam PF01535
Panther DB PTHR24015 PTHR24015:SF524
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32430 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g47370.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a049115 , Zm00025a015400 , Zm00025a040561
Brachypodium KQK14723
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G116600 anthranilate phosphoribosyltransferase, putative, expressed -
2 Sobic.003G398900 tetratricopeptide-like helical, putative, expressed -
3 Sobic.001G104050 - -
4 Sobic.001G296600 - -
5 Sobic.010G217466 - -
6 Sobic.002G246950 - -
7 Sobic.002G149550 - K03879: NADH-ubiquinone oxidoreductase chain 2
8 Sobic.007G044350 - -
9 Sobic.004G060000 DUF630/DUF632 domains containing protein, putative, expressed -
10 Sobic.009G221701 - -
11 Sobic.003G336400 pentatricopeptide, putative, expressed -
12 Sobic.010G265400 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
13 Sobic.003G018400 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.001G378150 - -
15 Sobic.001G177200 frigida, putative, expressed -
16 Sobic.009G209150 - -
17 Sobic.001G278400 expressed protein -
18 Sobic.003G419000 - -
19 Sobic.006G242600 RIPER9 - Ripening-related family protein precursor, putative, expressed -
20 Sobic.002G285950 - -


Gene co-expression network
sample Sobic002G411700 Sobic002G411700 Sobic006G116600 Sobic006G116600 Sobic002G411700--Sobic006G116600 Sobic003G398900 Sobic003G398900 Sobic002G411700--Sobic003G398900 Sobic001G104050 Sobic001G104050 Sobic002G411700--Sobic001G104050 Sobic001G296600 Sobic001G296600 Sobic002G411700--Sobic001G296600 Sobic010G217466 Sobic010G217466 Sobic002G411700--Sobic010G217466 Sobic002G246950 Sobic002G246950 Sobic002G411700--Sobic002G246950 Sobic002G149550 Sobic002G149550 Sobic002G411700--Sobic002G149550 Sobic007G044350 Sobic007G044350 Sobic002G411700--Sobic007G044350 Sobic004G060000 Sobic004G060000 Sobic002G411700--Sobic004G060000 Sobic006G116600--Sobic002G411700 Sobic009G221701 Sobic009G221701 Sobic006G116600--Sobic009G221701 Sobic006G116600--Sobic010G217466 Sobic006G116600--Sobic002G149550 Sobic006G242600 Sobic006G242600 Sobic006G116600--Sobic006G242600 Sobic003G336400 Sobic003G336400 Sobic006G116600--Sobic003G336400 Sobic001G177200 Sobic001G177200 Sobic006G116600--Sobic001G177200 Sobic008G175700 Sobic008G175700 Sobic006G116600--Sobic008G175700 Sobic001G378150 Sobic001G378150 Sobic006G116600--Sobic001G378150 Sobic003G398900--Sobic002G246950 Sobic003G398900--Sobic002G411700 Sobic005G161000 Sobic005G161000 Sobic003G398900--Sobic005G161000 Sobic001G484500 Sobic001G484500 Sobic003G398900--Sobic001G484500 Sobic003G398900--Sobic003G336400 Sobic003G303800 Sobic003G303800 Sobic003G398900--Sobic003G303800 Sobic002G060750 Sobic002G060750 Sobic003G398900--Sobic002G060750 Sobic009G160300 Sobic009G160300 Sobic003G398900--Sobic009G160300 Sobic003G398900--Sobic006G116600 Sobic001G104050--Sobic001G296600 Sobic010G265400 Sobic010G265400 Sobic001G104050--Sobic010G265400 Sobic004G357600 Sobic004G357600 Sobic001G104050--Sobic004G357600 Sobic001G104050--Sobic002G411700 Sobic001G104050--Sobic007G044350 Sobic004G070400 Sobic004G070400 Sobic001G104050--Sobic004G070400 Sobic004G249200 Sobic004G249200 Sobic001G104050--Sobic004G249200 Sobic001G036400 Sobic001G036400 Sobic001G104050--Sobic001G036400 Sobic004G070150 Sobic004G070150 Sobic001G104050--Sobic004G070150 Sobic001G296600--Sobic001G104050 Sobic001G296600--Sobic007G044350 Sobic004G223350 Sobic004G223350 Sobic001G296600--Sobic004G223350 Sobic001G296600--Sobic004G357600 Sobic003G267600 Sobic003G267600 Sobic001G296600--Sobic003G267600 Sobic007G173901 Sobic007G173901 Sobic001G296600--Sobic007G173901 Sobic004G205900 Sobic004G205900 Sobic001G296600--Sobic004G205900 Sobic003G276700 Sobic003G276700 Sobic001G296600--Sobic003G276700 Sobic002G008701 Sobic002G008701 Sobic001G296600--Sobic002G008701 Sobic010G217466--Sobic009G221701 Sobic010G217466--Sobic002G149550 Sobic010G217466--Sobic006G242600 Sobic003G396400 Sobic003G396400 Sobic010G217466--Sobic003G396400 Sobic002G429200 Sobic002G429200 Sobic010G217466--Sobic002G429200 Sobic010G217466--Sobic006G116600 Sobic002G285950 Sobic002G285950 Sobic010G217466--Sobic002G285950 Sobic010G149900 Sobic010G149900 Sobic010G217466--Sobic010G149900 Sobic010G217466--Sobic001G378150 Sobic002G246950--Sobic002G060750 Sobic002G246950--Sobic003G398900 Sobic003G018400 Sobic003G018400 Sobic002G246950--Sobic003G018400 Sobic002G246950--Sobic003G303800 Sobic002G246950--Sobic001G378150 Sobic002G246950--Sobic002G411700 Sobic002G246950--Sobic002G285950 Sobic002G246950--Sobic002G149550 Sobic007G094000 Sobic007G094000 Sobic002G246950--Sobic007G094000 Sobic002G149550--Sobic009G221701 Sobic002G149550--Sobic010G217466 Sobic002G149550--Sobic002G285950 Sobic002G149550--Sobic006G242600 Sobic002G149550--Sobic006G116600 Sobic002G149550--Sobic001G378150 Sobic002G149550--Sobic002G429200 Sobic002G149550--Sobic003G396400 Sobic002G149550--Sobic003G336400 Sobic007G044350--Sobic001G296600 Sobic007G044350--Sobic004G060000 Sobic007G044350--Sobic010G217466 Sobic007G044350--Sobic001G104050 Sobic006G108900 Sobic006G108900 Sobic007G044350--Sobic006G108900 Sobic002G262500 Sobic002G262500 Sobic007G044350--Sobic002G262500 Sobic007G044350--Sobic003G276700 Sobic006G119100 Sobic006G119100 Sobic007G044350--Sobic006G119100 Sobic007G044350--Sobic004G357600 Sobic004G060000--Sobic007G044350 Sobic001G278400 Sobic001G278400 Sobic004G060000--Sobic001G278400 Sobic006G233200 Sobic006G233200 Sobic004G060000--Sobic006G233200 Sobic004G060000--Sobic001G036400 Sobic004G060000--Sobic002G411700 Sobic001G378900 Sobic001G378900 Sobic004G060000--Sobic001G378900 Sobic004G060000--Sobic006G116600 Sobic001G276500 Sobic001G276500 Sobic004G060000--Sobic001G276500 Sobic004G060000--Sobic001G104050
Octagon: transcription factors


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