Gene annotation
Transcriptome id Sobic.003G336400.1
Synonym Sb03g038060
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6Q6T3
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF462
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14730 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g60250.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a027079
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G258600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.006G116600 anthranilate phosphoribosyltransferase, putative, expressed -
3 Sobic.001G378150 - -
4 Sobic.003G398900 tetratricopeptide-like helical, putative, expressed -
5 Sobic.001G177200 frigida, putative, expressed -
6 Sobic.003G013400 S-locus lectin protein kinase family protein, putative, expressed -
7 Sobic.002G149550 - K03879: NADH-ubiquinone oxidoreductase chain 2
8 Sobic.009G221701 - -
9 Sobic.002G429200 expressed protein -
10 Sobic.008G175700 RING-H2 finger protein ATL5D, putative, expressed -
11 Sobic.005G161000 expressed protein -
12 Sobic.002G411700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.005G008301 - -
14 Sobic.010G217466 - -
15 Sobic.002G246950 - -
16 Sobic.002G171200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
17 Sobic.007G070600 purine permease, putative, expressed -
18 Sobic.003G198701 - -
19 Sobic.010G173550 - -
20 Sobic.001G060666 - -


Gene co-expression network
sample Sobic003G336400 Sobic003G336400 Sobic010G258600 Sobic010G258600 Sobic003G336400--Sobic010G258600 Sobic006G116600 Sobic006G116600 Sobic003G336400--Sobic006G116600 Sobic001G378150 Sobic001G378150 Sobic003G336400--Sobic001G378150 Sobic003G398900 Sobic003G398900 Sobic003G336400--Sobic003G398900 Sobic001G177200 Sobic001G177200 Sobic003G336400--Sobic001G177200 Sobic003G013400 Sobic003G013400 Sobic003G336400--Sobic003G013400 Sobic002G149550 Sobic002G149550 Sobic003G336400--Sobic002G149550 Sobic009G221701 Sobic009G221701 Sobic003G336400--Sobic009G221701 Sobic002G429200 Sobic002G429200 Sobic003G336400--Sobic002G429200 Sobic010G258600--Sobic003G336400 Sobic005G008301 Sobic005G008301 Sobic010G258600--Sobic005G008301 Sobic002G171200 Sobic002G171200 Sobic010G258600--Sobic002G171200 Sobic010G258600--Sobic001G177200 Sobic010G069000 Sobic010G069000 Sobic010G258600--Sobic010G069000 Sobic002G264700 Sobic002G264700 Sobic010G258600--Sobic002G264700 Sobic005G161000 Sobic005G161000 Sobic010G258600--Sobic005G161000 Sobic010G258600--Sobic003G398900 Sobic010G258600--Sobic001G378150 Sobic002G411700 Sobic002G411700 Sobic006G116600--Sobic002G411700 Sobic006G116600--Sobic009G221701 Sobic010G217466 Sobic010G217466 Sobic006G116600--Sobic010G217466 Sobic006G116600--Sobic002G149550 Sobic006G242600 Sobic006G242600 Sobic006G116600--Sobic006G242600 Sobic006G116600--Sobic003G336400 Sobic006G116600--Sobic001G177200 Sobic008G175700 Sobic008G175700 Sobic006G116600--Sobic008G175700 Sobic006G116600--Sobic001G378150 Sobic002G285950 Sobic002G285950 Sobic001G378150--Sobic002G285950 Sobic007G119300 Sobic007G119300 Sobic001G378150--Sobic007G119300 Sobic001G378150--Sobic010G217466 Sobic001G378150--Sobic009G221701 Sobic001G378150--Sobic002G429200 Sobic001G378150--Sobic002G149550 Sobic002G246950 Sobic002G246950 Sobic001G378150--Sobic002G246950 Sobic001G378150--Sobic003G336400 Sobic003G224000 Sobic003G224000 Sobic001G378150--Sobic003G224000 Sobic003G398900--Sobic002G246950 Sobic003G398900--Sobic002G411700 Sobic003G398900--Sobic005G161000 Sobic001G484500 Sobic001G484500 Sobic003G398900--Sobic001G484500 Sobic003G398900--Sobic003G336400 Sobic003G303800 Sobic003G303800 Sobic003G398900--Sobic003G303800 Sobic002G060750 Sobic002G060750 Sobic003G398900--Sobic002G060750 Sobic009G160300 Sobic009G160300 Sobic003G398900--Sobic009G160300 Sobic003G398900--Sobic006G116600 Sobic001G177200--Sobic009G221701 Sobic001G177200--Sobic006G116600 Sobic001G177200--Sobic003G336400 Sobic001G177200--Sobic008G175700 Sobic003G396400 Sobic003G396400 Sobic001G177200--Sobic003G396400 Sobic001G177200--Sobic010G217466 Sobic005G143000 Sobic005G143000 Sobic001G177200--Sobic005G143000 Sobic001G177200--Sobic006G242600 Sobic001G177200--Sobic002G149550 Sobic003G013400--Sobic002G429200 Sobic003G013400--Sobic009G221701 Sobic003G013400--Sobic001G378150 Sobic003G013400--Sobic003G336400 Sobic007G070600 Sobic007G070600 Sobic003G013400--Sobic007G070600 Sobic003G013400--Sobic010G217466 Sobic003G013400--Sobic008G175700 Sobic003G013400--Sobic002G149550 Sobic003G013400--Sobic002G285950 Sobic002G149550--Sobic009G221701 Sobic002G149550--Sobic010G217466 Sobic002G149550--Sobic002G285950 Sobic002G149550--Sobic006G242600 Sobic002G149550--Sobic006G116600 Sobic002G149550--Sobic001G378150 Sobic002G149550--Sobic002G429200 Sobic002G149550--Sobic003G396400 Sobic002G149550--Sobic003G336400 Sobic009G221701--Sobic010G217466 Sobic009G221701--Sobic002G149550 Sobic009G221701--Sobic006G242600 Sobic009G221701--Sobic002G429200 Sobic009G221701--Sobic003G396400 Sobic005G106800 Sobic005G106800 Sobic009G221701--Sobic005G106800 Sobic003G299400 Sobic003G299400 Sobic009G221701--Sobic003G299400 Sobic009G221701--Sobic002G285950 Sobic009G221701--Sobic006G116600 Sobic002G375600 Sobic002G375600 Sobic002G429200--Sobic002G375600 Sobic003G292800 Sobic003G292800 Sobic002G429200--Sobic003G292800 Sobic002G429200--Sobic009G221701 Sobic005G230600 Sobic005G230600 Sobic002G429200--Sobic005G230600 Sobic002G189350 Sobic002G189350 Sobic002G429200--Sobic002G189350 Sobic002G429200--Sobic010G217466 Sobic002G429200--Sobic006G242600 Sobic002G429200--Sobic008G175700 Sobic002G429200--Sobic003G013400
Octagon: transcription factors


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