Gene annotation
Transcriptome id Sobic.010G099400.1
Synonym Sb10g008650, MMP
Functional annotation metalloendoproteinase 1 precursor, putative, expressed
UniProt C5Z7I6
Pfam PF01471 PF00413
Panther DB PTHR10201 PTHR10201:SF149
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006508proteolysis GO:0004222metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G70170 : matrix metalloproteinase
RAP-DB (Rice) LOC_Os06g13180.1 : metalloendoproteinase 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a049416
Brachypodium KQK18789
Barley HORVU7Hr1G039890.2 , HORVU7Hr1G039890.3 , HORVU7Hr1G039890.1 , HORVU7Hr1G039890.4 , HORVU7Hr1G039890.5 , HORVU6Hr1G076510.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G209300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.001G158000 selT/selW/selH selenoprotein domain containing protein, expressed -
3 Sobic.002G326050 - -
4 Sobic.010G158100 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.002G140100 expressed protein -
6 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
7 Sobic.010G158766 - -
8 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
9 Sobic.006G259201 - -
10 Sobic.001G139600 - -
11 Sobic.007G224600 - -
12 Sobic.001G220200 exo70 exocyst complex subunit domain containing protein, expressed -
13 Sobic.002G403400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
14 Sobic.010G096801 - -
15 Sobic.001G197500 - -
16 Sobic.006G227800 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
17 Sobic.010G206700 expressed protein -
18 Sobic.002G218200 protein kinase domain containing protein, expressed -
19 Sobic.001G519300 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
20 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11


Gene co-expression network
sample Sobic010G099400 Sobic010G099400 Sobic002G209300 Sobic002G209300 Sobic010G099400--Sobic002G209300 Sobic001G158000 Sobic001G158000 Sobic010G099400--Sobic001G158000 Sobic002G326050 Sobic002G326050 Sobic010G099400--Sobic002G326050 Sobic010G158100 Sobic010G158100 Sobic010G099400--Sobic010G158100 Sobic002G140100 Sobic002G140100 Sobic010G099400--Sobic002G140100 Sobic007G221800 Sobic007G221800 Sobic010G099400--Sobic007G221800 Sobic010G158766 Sobic010G158766 Sobic010G099400--Sobic010G158766 Sobic004G265400 Sobic004G265400 Sobic010G099400--Sobic004G265400 Sobic006G259201 Sobic006G259201 Sobic010G099400--Sobic006G259201 Sobic002G209300--Sobic001G158000 Sobic002G403400 Sobic002G403400 Sobic002G209300--Sobic002G403400 Sobic001G193400 Sobic001G193400 Sobic002G209300--Sobic001G193400 Sobic002G059200 Sobic002G059200 Sobic002G209300--Sobic002G059200 Sobic002G209300--Sobic004G265400 Sobic003G350100 Sobic003G350100 Sobic002G209300--Sobic003G350100 Sobic002G209300--Sobic007G221800 Sobic004G230900 Sobic004G230900 Sobic002G209300--Sobic004G230900 Sobic007G149600 Sobic007G149600 Sobic002G209300--Sobic007G149600 Sobic001G158000--Sobic007G221800 Sobic001G158000--Sobic002G326050 Sobic001G158000--Sobic004G265400 Sobic001G519300 Sobic001G519300 Sobic001G158000--Sobic001G519300 Sobic007G224600 Sobic007G224600 Sobic001G158000--Sobic007G224600 Sobic001G158000--Sobic007G149600 Sobic003G067500 Sobic003G067500 Sobic001G158000--Sobic003G067500 Sobic003G200501 Sobic003G200501 Sobic001G158000--Sobic003G200501 Sobic002G210200 Sobic002G210200 Sobic001G158000--Sobic002G210200 Sobic002G326050--Sobic002G140100 Sobic002G326050--Sobic010G158100 Sobic001G139600 Sobic001G139600 Sobic002G326050--Sobic001G139600 Sobic006G227800 Sobic006G227800 Sobic002G326050--Sobic006G227800 Sobic002G326050--Sobic001G158000 Sobic001G220200 Sobic001G220200 Sobic002G326050--Sobic001G220200 Sobic002G326050--Sobic001G519300 Sobic002G218200 Sobic002G218200 Sobic002G326050--Sobic002G218200 Sobic004G357033 Sobic004G357033 Sobic002G326050--Sobic004G357033 Sobic010G158100--Sobic001G139600 Sobic010G158100--Sobic002G326050 Sobic010G158100--Sobic002G140100 Sobic010G158100--Sobic002G218200 Sobic001G410800 Sobic001G410800 Sobic010G158100--Sobic001G410800 Sobic010G158100--Sobic001G220200 Sobic005G232200 Sobic005G232200 Sobic010G158100--Sobic005G232200 Sobic010G158100--Sobic010G158766 Sobic001G535601 Sobic001G535601 Sobic010G158100--Sobic001G535601 Sobic002G140100--Sobic001G139600 Sobic002G140100--Sobic002G326050 Sobic002G140100--Sobic005G232200 Sobic002G140100--Sobic006G227800 Sobic010G206700 Sobic010G206700 Sobic002G140100--Sobic010G206700 Sobic002G140100--Sobic010G158100 Sobic002G140100--Sobic002G218200 Sobic002G140100--Sobic001G410800 Sobic001G261553 Sobic001G261553 Sobic002G140100--Sobic001G261553 Sobic007G221800--Sobic007G149600 Sobic007G221800--Sobic003G200501 Sobic007G221800--Sobic002G210200 Sobic007G221800--Sobic004G265400 Sobic007G221800--Sobic003G067500 Sobic002G284901 Sobic002G284901 Sobic007G221800--Sobic002G284901 Sobic002G320900 Sobic002G320900 Sobic007G221800--Sobic002G320900 Sobic003G067300 Sobic003G067300 Sobic007G221800--Sobic003G067300 Sobic007G093400 Sobic007G093400 Sobic007G221800--Sobic007G093400 Sobic010G158766--Sobic001G220200 Sobic010G158766--Sobic004G357033 Sobic010G158766--Sobic001G410800 Sobic010G096801 Sobic010G096801 Sobic010G158766--Sobic010G096801 Sobic004G344301 Sobic004G344301 Sobic010G158766--Sobic004G344301 Sobic009G225300 Sobic009G225300 Sobic010G158766--Sobic009G225300 Sobic010G158766--Sobic006G259201 Sobic010G158766--Sobic010G158100 Sobic010G158766--Sobic007G224600 Sobic004G265400--Sobic007G149600 Sobic004G265400--Sobic007G221800 Sobic004G265400--Sobic003G350100 Sobic004G265400--Sobic003G067300 Sobic004G265400--Sobic003G067500 Sobic004G265400--Sobic003G200501 Sobic004G265400--Sobic002G210200 Sobic004G265400--Sobic001G193400 Sobic004G265400--Sobic002G059200 Sobic006G259201--Sobic001G220200 Sobic006G259201--Sobic007G224600 Sobic006G259201--Sobic010G158766 Sobic006G259201--Sobic001G410800 Sobic006G259201--Sobic007G221800 Sobic006G259201--Sobic002G320900 Sobic006G259201--Sobic001G519300 Sobic003G065001 Sobic003G065001 Sobic006G259201--Sobic003G065001 Sobic006G259201--Sobic002G210200
Octagon: transcription factors


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